RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1074407" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1074407 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
188884 188884 PRJNA1074407_P_NODE_145941_length_240_cov_0.910180_g142103_i0 PRJNA1074407 145941 240 0.91018 2.184432 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 90.1 2.4e-21   NR XP_004032297.1 5932 g142103 i0 57.1 1.925 77 33 96.3 0 232 2 3 79 XP_004032297.1 hypothetical protein IMG5_125120 [Ichthyophthirius multifiliis] diamond 462 90.9 0.991199119911991 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
30130273 30130273 PRJNA1074407_P_NODE_93132_length_374_cov_0.830565_g89295_i0 PRJNA1074407 93132 374 0.830565 3.1063131 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 69.7 2.45e-11   NR MES1907185.1 1215613 g89295 i0 62 1.30748663101604 50 19 40.1 0 331 182 1 50 MES1907185.1 hypothetical protein [Cercozoa sp. M6MM] diamond 489 69.7 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
32430179 32430179 PRJNA1074407_P_NODE_139259_length_246_cov_0.878613_g135421_i0 PRJNA1074407 139259 246 0.878613 2.16138798 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 53.9 4.44e-6   NR ETO28390.1 46433 g135421 i0 41.4 3 58 32 69.5 2 231 61 180 236 ETO28390.1 hypothetical protein RFI_08745 [Reticulomyxa filosa] diamond 738 54.3 0.992633517495396 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;