RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1074407" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1074407 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26909256 26909256 PRJNA1074407_P_NODE_124702_length_275_cov_1.128713_g120864_i0 PRJNA1074407 124702 275 1.128713 3.10396075 Luteibaculaceae bacterium 3050382 Bacteria Bacteria 43.1 0.0393   NR MFT5337230.1 3050382 g120864 i0 30.8 0.567272727272727 52 36 56.7 0 177 22 322 373 MFT5337230.1 lipopolysaccharide export system protein LptA [Luteibaculaceae bacterium] diamond 156 43.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Luteibaculaceae   Luteibaculaceae bacterium
27857013 27857013 PRJNA1074407_P_NODE_139005_length_246_cov_0.878613_g135167_i0 PRJNA1074407 139005 246 0.878613 2.16138798 Pedobacter nutrimenti 1241337 Bacteria Bacteria 125 3.16e-31   NR WP_110827936.1 1241337 g135167 i0 100 0.74390243902439 61 0 74.4 0 1 183 968 1028 WP_110827936.1 SusC/RagA family TonB-linked outer membrane protein [Pedobacter nutrimenti] diamond 183 125 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter nutrimenti
29877992 29877992 PRJNA1074407_P_NODE_144111_length_242_cov_0.899408_g140273_i0 PRJNA1074407 144111 242 0.899408 2.17656736 uncultured Porphyromonas sp. 159274 Bacteria Bacteria 174 7.93e-50   NR WP_297125082.1 159274 g140273 i0 98.8 0.991735537190083 80 1 99.2 0 3 242 82 161 WP_297125082.1 hypothetical protein [uncultured Porphyromonas sp.] diamond 240 174 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas uncultured Porphyromonas sp.
29909629 29909629 PRJNA1074407_P_NODE_82791_length_419_cov_2.465318_g78955_i0 PRJNA1074407 82791 419 2.465318 10.32968242 Chitinophaga deserti 2164099 Bacteria Bacteria 46.6 0.00873   NR WP_109700658.1 2164099 g78955 i0 37.1 0.443914081145585 62 37 44.4 1 192 7 212 271 WP_109700658.1 alpha-1,2-fucosyltransferase [Chitinophaga deserti] diamond 186 46.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga deserti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;