RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1073712" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073712 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26932392 26932392 PRJNA1073712_P_NODE_4982_length_333_cov_1.180769_g4899_i0 PRJNA1073712 4982 333 1.180769 3.93196077 Myxococcia 32015 Bacteria Bacteria 62.8 2.8e-9   NR MBK7073293.1 2026763 g4899 i0 35.7 1.76576576576577 98 57 88.3 2 12 305 110 201 MBK7073293.1 hypothetical protein [Myxococcales bacterium] diamond 588 62.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
26972406 26972406 PRJNA1073712_P_NODE_16922_length_241_cov_0.916667_g16839_i0 PRJNA1073712 16922 241 0.916667 2.20916747 Kofleriaceae bacterium 2212474 Bacteria Bacteria 123 1.39e-30   NR MBE7448291.1 2212474 g16839 i0 82.9 4.7551867219917 76 13 94.6 0 1 228 1381 1456 MBE7448291.1 glutamate synthase large subunit [Kofleriaceae bacterium] diamond 1146 123 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27185207 27185207 PRJNA1073712_P_NODE_11342_length_251_cov_0.865169_g11259_i0 PRJNA1073712 11342 251 0.865169 2.17157419 Myxococcia 32015 Bacteria Bacteria 149 1.92e-39   NR HEY2513701.1 2268199 g11259 i0 91.8 4.36254980079681 73 6 87.3 0 251 33 903 975 HEY2513701.1 glycosyltransferase family 39 protein [Polyangiaceae bacterium] diamond 1095 149 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30848797 30848797 PRJNA1073712_P_NODE_15994_length_242_cov_1.775148_g15911_i0 PRJNA1073712 15994 242 1.775148 4.29585816 Bacteria 2 Bacteria Bacteria 61.2 1.13e-8   NR NMB75069.1 2026763 g15911 i0 41.3 1.74793388429752 80 42 96.7 3 234 1 737 813 NMB75069.1 lamin tail domain-containing protein [Myxococcales bacterium] diamond 423 61.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32177149 32177149 PRJNA1073712_P_NODE_13238_length_247_cov_0.885057_g13155_i0 PRJNA1073712 13238 247 0.885057 2.18609079 Myxococcales 29 Bacteria Bacteria 113 2.36e-30   NR WP_075006206.1 41 g13155 i0 78.4 2.69635627530364 74 16 89.9 0 24 245 1 74 WP_075006206.1 monovalent cation/H(+) antiporter subunit G [Stigmatella aurantiaca] diamond 666 114 0.991228070175439 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
32565457 32565457 PRJNA1073712_P_NODE_14439_length_245_cov_0.895349_g14356_i0 PRJNA1073712 14439 245 0.895349 2.19360505 Myxococcales bacterium 2026763 Bacteria Bacteria 47.4 4.63e-4   NR MBL0219527.1 2026763 g14356 i0 44.4 0.771428571428571 63 31 73.5 3 238 59 95 156 MBL0219527.1 hypothetical protein [Myxococcales bacterium] diamond 189 47.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32627961 32627961 PRJNA1073712_P_NODE_11180_length_251_cov_0.865169_g11097_i0 PRJNA1073712 11180 251 0.865169 2.17157419 Polyangiales bacterium 3034171 Bacteria Bacteria 151 1.28e-45   NR MET0388687.1 3034171 g11097 i0 97.3 0.872509960159363 73 2 87.3 0 219 1 1 73 MET0388687.1 VOC family protein [Polyangiales bacterium] diamond 219 151 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;