RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1073712" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073712 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26814331 26814331 PRJNA1073712_P_NODE_13261_length_247_cov_0.885057_g13178_i0 PRJNA1073712 13261 247 0.885057 2.18609079 Microcoleus sp. herbarium14 3055439 Bacteria Bacteria 81.6 8.17e-16   NR WP_333357917.1 3055439 g13178 i0 46.3 2.91497975708502 80 42 97.2 1 247 8 191 269 WP_333357917.1 AAA family ATPase, partial [Microcoleus sp. herbarium14] diamond 720 81.6 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Microcoleus Microcoleus sp. herbarium14
31805757 31805757 PRJNA1073712_P_NODE_16817_length_241_cov_0.916667_g16734_i0 PRJNA1073712 16817 241 0.916667 2.20916747 Planktothrix sp. 3088171 Bacteria Bacteria 63.2 2.3e-9   NR WP_408970632.1 3088171 g16734 i0 49.2 1.51867219917012 61 31 75.9 0 48 230 1226 1286 WP_408970632.1 trifunctional serine/threonine-protein kinase/ATP-binding protein/sensor histidine kinase [Planktothrix sp.] diamond 366 63.2 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;