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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA1073712" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073712 · 32 ✖

analysis 1

  • diamond · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16764541 16764541 PRJNA1073712_P_NODE_4514_length_343_cov_1.940741_g4431_i0 PRJNA1073712 4514 343 1.940741 6.65674163 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 202 1.47e-60   NR NP_001091127.1 8355 g4431 i0 86 22.932944606414 114 16 99.7 0 2 343 29 142 NP_001091127.1 uncharacterized protein LOC100036877 [Xenopus laevis] diamond 7866 204 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
26900847 26900847 PRJNA1073712_P_NODE_5621_length_319_cov_1.341463_g5538_i0 PRJNA1073712 5621 319 1.341463 4.27926697 Mammalia 40674 Chordata Chordata 73.2 1.04e-12   NR XP_007530638.1 9365 g5538 i0 65.5 7.03448275862069 58 20 54.5 0 176 3 1 58 XP_007530638.1 olfactory receptor 10K1 [Erinaceus europaeus] diamond 2244 73.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Erinaceidae Erinaceus Erinaceus europaeus
26995389 26995389 PRJNA1073712_P_NODE_5802_length_316_cov_0.950617_g5719_i0 PRJNA1073712 5802 316 0.950617 3.00394972 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 9.13e-28   NR XP_025919739.1 308060 g5719 i0 54.8 9.87341772151899 104 47 98.7 0 5 316 195 298 XP_025919739.1 ammonium transporter Rh type A [Apteryx rowi] diamond 3120 116 0.991379310344828 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx rowi
27185209 27185209 PRJNA1073712_P_NODE_862_length_630_cov_1.294434_g779_i0 PRJNA1073712 862 630 1.294434 8.1549342 Mammalia 40674 Chordata Chordata 54.7 6.43e-5   NR EMP34551.1 8469 g779 i0 71.4 6 42 12 20 0 2 127 197 238 EMP34551.1 Protein FAM78B [Chelonia mydas] diamond 3780 55.1 0.992740471869329 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
27383564 27383564 PRJNA1073712_P_NODE_14143_length_246_cov_0.890173_g14060_i0 PRJNA1073712 14143 246 0.890173 2.18982558 Oryctolagus cuniculus 9986 Chordata Chordata 51.6 2.95e-5   NR XP_002713428.3 9986 g14060 i0 46.8 2.36585365853659 47 20 51.2 1 245 120 2146 2192 XP_002713428.3 stabilin-1 [Oryctolagus cuniculus] diamond 582 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
27888560 27888560 PRJNA1073712_P_NODE_1625_length_490_cov_0.944844_g1542_i0 PRJNA1073712 1625 490 0.944844 4.6297356 Fukomys damarensis 885580 Chordata Chordata 65.5 5.25e-9   NR KFO18957.1 885580 g1542 i0 63.6 0.336734693877551 55 20 33.7 0 345 181 1 55 KFO18957.1 BarH-like 2 homeobox protein [Fukomys damarensis] diamond 165 65.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Fukomys Fukomys damarensis
28425561 28425561 PRJNA1073712_P_NODE_9166_length_270_cov_1.172589_g9083_i0 PRJNA1073712 9166 270 1.172589 3.1659903 Fukomys damarensis 885580 Chordata Chordata 66.2 2.69e-10   NR XP_010626660.2 885580 g9083 i0 44.4 0.9 81 45 90 0 264 22 47 127 XP_010626660.2 homeobox protein Hox-A5 [Fukomys damarensis] diamond 243 66.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Fukomys Fukomys damarensis
28457128 28457128 PRJNA1073712_P_NODE_10926_length_252_cov_2.581006_g10843_i0 PRJNA1073712 10926 252 2.581006 6.50413512 Felis catus 9685 Chordata Chordata 61.2 1.28e-8   NR XP_023095022.1 9685 g10843 i0 64.3 0.5 42 15 50 0 52 177 24 65 XP_023095022.1 hepatocyte cell adhesion molecule isoform X1 [Felis catus] diamond 126 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Felis Felis catus
28457130 28457130 PRJNA1073712_P_NODE_7286_length_290_cov_2.235023_g7203_i0 PRJNA1073712 7286 290 2.235023 6.4815667 Fukomys damarensis 885580 Chordata Chordata 52 3.48e-5   NR XP_010626660.2 885580 g7203 i0 45.6 0.589655172413793 57 31 59 0 173 3 47 103 XP_010626660.2 homeobox protein Hox-A5 [Fukomys damarensis] diamond 171 52 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Fukomys Fukomys damarensis
28583472 28583472 PRJNA1073712_P_NODE_16287_length_242_cov_0.911243_g16204_i0 PRJNA1073712 16287 242 0.911243 2.20520806 Protopterus annectens 7888 Chordata Chordata 73.6 1.09e-14   NR XP_043924616.1 7888 g16204 i0 43.4 1.92148760330579 76 43 94.2 0 232 5 27 102 XP_043924616.1 macrophage migration inhibitory factor-like [Protopterus annectens] diamond 465 73.6 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
28701251 28701251 PRJNA1073712_P_NODE_4747_length_338_cov_1.237736_g4664_i0 PRJNA1073712 4747 338 1.237736 4.18354768 Mammalia 40674 Chordata Chordata 79.7 3.41e-16   NR AAA18780.1 10090 g4664 i0 75 36.6390532544379 48 12 42.6 0 3 146 52 99 AAA18780.1 GDF7, partial [Mus musculus] diamond 12384 79.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28772657 28772657 PRJNA1073712_P_NODE_4867_length_335_cov_2.629771_g4784_i0 PRJNA1073712 4867 335 2.629771 8.80973285 Erinaceus europaeus 9365 Chordata Chordata 53.1 2.5e-5   NR XP_060053346.1 9365 g4784 i0 65.7 1.7910447761194 35 12 31.3 0 106 2 808 842 XP_060053346.1 vascular endothelial growth factor receptor 3 isoform X1 [Erinaceus europaeus] diamond 600 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Erinaceidae Erinaceus Erinaceus europaeus
29174910 29174910 PRJNA1073712_P_NODE_12409_length_249_cov_0.875000_g12326_i0 PRJNA1073712 12409 249 0.875 2.17875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 122 2.03e-32   NR XP_043918615.1 7888 g12326 i0 73 21.6626506024096 74 20 89.2 0 226 5 64 137 XP_043918615.1 coiled-coil domain-containing protein 25 isoform X1 [Protopterus annectens] diamond 5394 122 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
29490334 29490334 PRJNA1073712_P_NODE_7510_length_288_cov_1.316279_g7427_i0 PRJNA1073712 7510 288 1.316279 3.79088352 Mammalia 40674 Chordata Chordata 66.6 2.6200000000000003e-10   NR XP_004717019.1 9371 g7427 i0 85.7 18.9583333333333 35 5 36.5 0 106 2 1217 1251 XP_004717019.1 adenomatous polyposis coli protein 2 isoform X4 [Echinops telfairi] diamond 5460 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
29647943 29647943 PRJNA1073712_P_NODE_7790_length_285_cov_1.018868_g7707_i0 PRJNA1073712 7790 285 1.018868 2.9037738 Mammalia 40674 Chordata Chordata 79.3 8.56e-15   NR XP_044635622.2 9793 g7707 i0 58.7 4.64210526315789 63 26 66.3 0 285 97 597 659 XP_044635622.2 transcription factor SOX-1 [Equus asinus] diamond 1323 80.1 0.990012484394507 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus asinus
29972604 29972604 PRJNA1073712_P_NODE_8391_length_278_cov_1.497561_g8308_i0 PRJNA1073712 8391 278 1.497561 4.16321958 Pristiophorus japonicus 55135 Chordata Chordata 52 3.19e-5   NR XP_070756643.1 55135 g8308 i0 55.3 1.89928057553957 38 17 41 0 2 115 694 731 XP_070756643.1 FYVE, RhoGEF and PH domain-containing protein 4-like isoform X1 [Pristiophorus japonicus] diamond 528 52 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes   Pristiophoridae Pristiophorus Pristiophorus japonicus
30035863 30035863 PRJNA1073712_P_NODE_1211_length_549_cov_1.260504_g1128_i0 PRJNA1073712 1211 549 1.260504 6.92016696 Orcinus orca 9733 Chordata Chordata 51.6 6.22e-4   NR XP_049569077.1 9733 g1128 i0 56.4 0.601092896174863 55 23 30.1 1 154 318 1222 1275 XP_049569077.1 liprin-alpha-4 isoform X1 [Orcinus orca] diamond 330 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Orcinus Orcinus orca
30058755 30058755 PRJNA1073712_P_NODE_11451_length_251_cov_0.865169_g11368_i0 PRJNA1073712 11451 251 0.865169 2.17157419 Saccopteryx 59481 Chordata Chordata 58.9 7.8e-8   NR XP_066093304.1 59482 g11368 i0 45.3 12.5856573705179 75 40 89.6 1 3 227 58 131 XP_066093304.1 ankyrin repeat and SOCS box protein 10 isoform X4 [Saccopteryx bilineata] diamond 3159 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Emballonuridae Saccopteryx Saccopteryx bilineata
30098862 30098862 PRJNA1073712_P_NODE_6892_length_297_cov_1.267857_g6809_i0 PRJNA1073712 6892 297 1.267857 3.76553529 Orycteropus afer afer 1230840 Chordata Chordata 48.9 4.9e-4   NR XP_007940468.1 1230840 g6809 i0 56.1 0.828282828282828 41 18 41.4 0 10 132 92 132 XP_007940468.1 PR domain zinc finger protein 13 [Orycteropus afer afer] diamond 246 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Tubulidentata Orycteropodidae Orycteropus Orycteropus afer
30248729 30248729 PRJNA1073712_P_NODE_2712_length_407_cov_2.002994_g2629_i0 PRJNA1073712 2712 407 2.002994 8.15218558 Mammalia 40674 Chordata Chordata 55.1 9.25e-6   NR XP_047565711.1 9657 g2629 i0 59.3 1.20884520884521 54 21 39.1 1 250 92 73 126 XP_047565711.1 LOW QUALITY PROTEIN: calcyclin-binding protein-like [Lutra lutra] diamond 492 55.5 0.992792792792793 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Lutra Lutra lutra
30438301 30438301 PRJNA1073712_P_NODE_6093_length_310_cov_1.801688_g6010_i0 PRJNA1073712 6093 310 1.801688 5.5852328 Chordata 7711 Chordata Chordata 102 5.36e-23   NR XP_067886915.1 7792 g6010 i0 61.7 87.6387096774194 81 31 78.4 0 67 309 310 390 XP_067886915.1 growth/differentiation factor 6-A [Heterodontus francisci] diamond 27168 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
30920678 30920678 PRJNA1073712_P_NODE_2514_length_418_cov_1.800000_g2431_i0 PRJNA1073712 2514 418 1.8 7.524 Fukomys damarensis 885580 Chordata Chordata 70.1 6.2e-11   NR XP_010638550.1 885580 g2431 i0 49.3 4.49282296650718 75 37 53.1 1 407 186 158 232 XP_010638550.1 mitochondria-eating protein isoform X12 [Fukomys damarensis] diamond 1878 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Fukomys Fukomys damarensis
31006773 31006773 PRJNA1073712_P_NODE_13674_length_246_cov_2.121387_g13591_i0 PRJNA1073712 13674 246 2.121387 5.21861202 Aves 8782 Chordata Chordata 93.6 3.28e-20   NR KAK2520218.1 8932 g13591 i0 64.2 20.7439024390244 81 29 98.8 0 244 2 217 297 KAK2520218.1 Mab21l2 [Columba livia] diamond 5103 93.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Columba Columba livia
31015261 31015261 PRJNA1073712_P_NODE_15415_length_243_cov_1.811765_g15332_i0 PRJNA1073712 15415 243 1.811765 4.40258895 Branchiostoma floridae 7739 Chordata Chordata 53.1 7.48e-6   NR XP_035683361.1 7739 g15332 i0 44.4 0.777777777777778 63 29 77.8 2 191 3 112 168 XP_035683361.1 cysteine-rich motor neuron 1 protein-like [Branchiostoma floridae] diamond 189 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31132868 31132868 PRJNA1073712_P_NODE_8075_length_281_cov_1.759615_g7992_i0 PRJNA1073712 8075 281 1.759615 4.94451815 Carnivora 33554 Chordata Chordata 100 1.0300000000000001e-22   NR VCW50085.1 48420 g7992 i0 60.9 1.8576512455516 87 34 92.9 0 280 20 41 127 VCW50085.1 unnamed protein product, partial [Gulo gulo] diamond 522 100 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Gulo Gulo gulo
31141264 31141264 PRJNA1073712_P_NODE_1975_length_455_cov_2.329843_g1892_i0 PRJNA1073712 1975 455 2.329843 10.60078565 Myotis lucifugus 59463 Chordata Chordata 94 1.92e-19   NR XP_023601374.1 59463 g1892 i0 48.5 1.95824175824176 99 51 65.3 0 387 91 275 373 XP_023601374.1 RNA-binding motif, single-stranded-interacting protein 1 isoform X3 [Myotis lucifugus] diamond 891 94 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis lucifugus
31576002 31576002 PRJNA1073712_P_NODE_11116_length_251_cov_1.269663_g11033_i0 PRJNA1073712 11116 251 1.269663 3.18685413 Chordata 7711 Chordata Chordata 90.1 3.09e-19   NR XP_030309550.1 9244 g11033 i0 63 8.17529880478088 81 30 96.8 0 6 248 259 339 XP_030309550.1 LOW QUALITY PROTEIN: ventral anterior homeobox 1 [Calypte anna] diamond 2052 90.5 0.995580110497237 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Trochilidae Calypte Calypte anna
31584581 31584581 PRJNA1073712_P_NODE_5656_length_318_cov_2.244898_g5573_i0 PRJNA1073712 5656 318 2.244898 7.13877564 Chinchilla lanigera 34839 Chordata Chordata 67.8 1.32e-10   NR XP_005414808.1 34839 g5573 i0 60.4 3.5 53 21 50 0 221 63 26 78 XP_005414808.1 PREDICTED: solute carrier family 22 member 8 isoform X2 [Chinchilla lanigera] diamond 1113 67.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Chinchillidae Chinchilla Chinchilla lanigera
31702412 31702412 PRJNA1073712_P_NODE_7337_length_290_cov_1.175115_g7254_i0 PRJNA1073712 7337 290 1.175115 3.4078335 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 118 1.22e-31   NR AAN73350.1 7740 g7254 i0 64.3 9.02068965517241 84 30 86.9 0 252 1 1 84 AAN73350.1 ribosomal protein L17, partial [Branchiostoma lanceolatum] diamond 2616 118 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
32153875 32153875 PRJNA1073712_P_NODE_2058_length_448_cov_1.224000_g1975_i0 PRJNA1073712 2058 448 1.224 5.48352 Tupaia chinensis 246437 Chordata Chordata 195 9.32e-58   NR XP_027623112.1 246437 g1975 i0 70.2 1.91517857142857 141 42 94.4 0 433 11 179 319 XP_027623112.1 LOW QUALITY PROTEIN: homeobox protein Hox-B3 [Tupaia chinensis] diamond 858 195 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Scandentia Tupaiidae Tupaia Tupaia chinensis
32682458 32682458 PRJNA1073712_P_NODE_5660_length_318_cov_2.110204_g5577_i0 PRJNA1073712 5660 318 2.110204 6.71044872 Chordata 7711 Chordata Chordata 163 3.259999999999999e-47   NR KAJ1119051.1 8319 g5577 i0 69.8 41 106 32 100 0 318 1 66 171 KAJ1119051.1 hypothetical protein NDU88_007237 [Pleurodeles waltl] diamond 13038 163 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
32848498 32848498 PRJNA1073712_P_NODE_6100_length_310_cov_1.637131_g6017_i0 PRJNA1073712 6100 310 1.637131 5.0751061 Odocoileus virginianus 9874 Chordata Chordata 58.2 2.64e-7   NR XP_070330315.1 9874 g6017 i0 45.5 2.98064516129032 77 38 70.6 1 230 12 145 221 XP_070330315.1 uncharacterized protein [Odocoileus virginianus] diamond 924 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;