RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1073712" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073712 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27446878 27446878 PRJNA1073712_P_NODE_15283_length_244_cov_0.900585_g15200_i0 PRJNA1073712 15283 244 0.900585 2.1974274 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 139 7.72e-38   NR PZP55147.1 349221 g15200 i0 90 0.983606557377049 80 8 98.4 0 3 242 237 316 PZP55147.1 MAG: hypothetical protein DI586_07735 [Micavibrio aeruginosavorus] diamond 240 139 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
30288970 30288970 PRJNA1073712_P_NODE_13492_length_247_cov_0.885057_g13409_i0 PRJNA1073712 13492 247 0.885057 2.18609079 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 60.1 6.42e-10   NR MBX2987089.1 2026715 g13409 i0 79.5 0.473684210526316 39 8 47.4 0 129 245 1 39 MBX2987089.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 117 60.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31331280 31331280 PRJNA1073712_P_NODE_12776_length_248_cov_0.880000_g12693_i0 PRJNA1073712 12776 248 0.88 2.1824 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 141 7.14e-39   NR PZP56550.1 349221 g12693 i0 87.7 0.979838709677419 81 10 98 0 244 2 199 279 PZP56550.1 MAG: glycerol-3-phosphate acyltransferase [Micavibrio aeruginosavorus] diamond 243 141 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
32722643 32722643 PRJNA1073712_P_NODE_12520_length_249_cov_0.875000_g12437_i0 PRJNA1073712 12520 249 0.875 2.17875 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 123 2.33e-32   NR PZP57235.1 349221 g12437 i0 68.3 0.987951807228916 82 26 98.8 0 3 248 11 92 PZP57235.1 MAG: aminodeoxychorismate synthase component I, partial [Micavibrio aeruginosavorus] diamond 246 123 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;