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contig_metadata

34 rows where analysis = "diamond", bioproject = "PRJNA1073712" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 34 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073712 · 34 ✖

analysis 1

  • diamond · 34 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
187534 187534 PRJNA1073712_P_NODE_11481_length_251_cov_0.865169_g11398_i0 PRJNA1073712 11481 251 0.865169 2.17157419 Micrococcus flavus 384602 Bacteria Bacteria 176 2.1e-50   NR WP_135030411.1 384602 g11398 i0 95.2 0.99203187250996006 83 4 99.2 0 2 250 387 469 WP_135030411.1 SDR family oxidoreductase [Micrococcus flavus] diamond 249 176 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus flavus
5290417 5290417 PRJNA1073712_P_NODE_16845_length_241_cov_0.916667_g16762_i0 PRJNA1073712 16845 241 0.916667 2.20916747 Nocardiopsis coralli 2772213 Bacteria Bacteria 162 1.6099999999999998e-45   NR WP_193123598.1 2772213 g16762 i0 96.3 0.995850622406639 80 3 99.6 0 2 241 245 324 WP_193123598.1 molybdopterin-dependent oxidoreductase [Nocardiopsis coralli] diamond 240 162 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis coralli
7840167 7840167 PRJNA1073712_P_NODE_12207_length_249_cov_0.875000_g12124_i0 PRJNA1073712 12207 249 0.875 2.17875 Ornithinimicrobium cerasi 2248773 Bacteria Bacteria 130 1.05e-34   NR WP_122261301.1 2248773 g12124 i0 82.9 3.93975903614458 82 14 98.8 0 248 3 75 156 WP_122261301.1 NAD-dependent epimerase/dehydratase family protein [Ornithinimicrobium cerasi] diamond 981 130 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Ornithinimicrobium Ornithinimicrobium cerasi
7840207 7840207 PRJNA1073712_P_NODE_15167_length_244_cov_0.900585_g15084_i0 PRJNA1073712 15167 244 0.900585 2.1974274 Schaalia 2529408 Bacteria Bacteria 154 2.54e-45   NR MBF1087895.1 2691890 g15084 i0 93.8 2.98770491803279 81 5 99.6 0 244 2 62 142 MBF1087895.1 TlyA family RNA methyltransferase [Schaalia sp.] diamond 729 155 0.993548387096774 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia sp.
11666185 11666185 PRJNA1073712_P_NODE_10310_length_259_cov_1.338710_g10227_i0 PRJNA1073712 10310 259 1.33871 3.4672589 Humibacter sp. 1940291 Bacteria Bacteria 171 1.23e-52   NR HWU46803.1 1940291 g10227 i0 97.6 0.984555984555985 85 2 98.5 0 257 3 13 97 HWU46803.1 SRPBCC domain-containing protein [Humibacter sp.] diamond 255 171 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Humibacter Humibacter sp.
12941410 12941410 PRJNA1073712_P_NODE_9011_length_271_cov_1.994949_g8928_i0 PRJNA1073712 9011 271 1.994949 5.40631179 Corynebacterium incognita 2754725 Bacteria Bacteria 160 1.6299999999999999e-43   NR WP_185176286.1 2754725 g8928 i0 87.6 0.985239852398524 89 11 98.5 0 3 269 250 338 WP_185176286.1 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [Corynebacterium incognita] diamond 267 160 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium incognita
14216340 14216340 PRJNA1073712_P_NODE_8752_length_274_cov_1.378109_g8669_i0 PRJNA1073712 8752 274 1.378109 3.77601866 Actinomyces sp. Marseille-P31 29317 Bacteria Bacteria 134 4.899999999999998e-35   NR WP_108834254.1 2083009 g8669 i0 100 0.996350364963504 91 0 99.6 0 2 274 323 413 WP_108834254.1 hypothetical protein [Actinomyces sp. Marseille-P3109] diamond 273 134 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. Marseille-P3109
14216344 14216344 PRJNA1073712_P_NODE_9012_length_271_cov_1.944444_g8929_i0 PRJNA1073712 9012 271 1.944444 5.26944324 Peptidiphaga gingivicola 2741497 Bacteria Bacteria 175 1.3099999999999999e-48   NR WP_064231383.1 2741497 g8929 i0 95.6 0.996309963099631 90 4 99.6 0 270 1 520 609 WP_064231383.1 type I polyketide synthase [Peptidiphaga gingivicola] diamond 270 175 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Peptidiphaga Peptidiphaga gingivicola
15490263 15490263 PRJNA1073712_P_NODE_9253_length_269_cov_1.392857_g9170_i0 PRJNA1073712 9253 269 1.392857 3.74678533 Bacteria 2 Bacteria Bacteria 172 7.469999999999998e-48   NR WP_392082883.1 1898 g9170 i0 98.9 2.97769516728625 89 1 99.3 0 269 3 405 493 WP_392082883.1 efflux RND transporter permease subunit, partial [Streptomyces cacaoi] diamond 801 172 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cacaoi
16764465 16764465 PRJNA1073712_P_NODE_11714_length_250_cov_0.870056_g11631_i0 PRJNA1073712 11714 250 0.870056 2.17514 Nocardioides aurantiacus 86796 Bacteria Bacteria 140 1.7999999999999998e-36   NR WP_123391786.1 86796 g11631 i0 97.6 0.996 83 2 99.6 0 2 250 719 801 WP_123391786.1 chromosome segregation protein SMC [Nocardioides aurantiacus] diamond 249 140 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides aurantiacus
20588577 20588577 PRJNA1073712_P_NODE_12777_length_248_cov_0.880000_g12694_i0 PRJNA1073712 12777 248 0.88 2.1824 uncultured Rothia sp. 316088 Bacteria Bacteria 155 5.76e-42   NR WP_294633662.1 316088 g12694 i0 97.6 1.98387096774194 82 2 99.2 0 247 2 455 536 WP_294633662.1 ATP-binding protein [uncultured Rothia sp.] diamond 492 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia uncultured Rothia sp.
20588604 20588604 PRJNA1073712_P_NODE_15877_length_243_cov_0.905882_g15794_i0 PRJNA1073712 15877 243 0.905882 2.20129326 Lawsonella clevelandensis 1528099 Bacteria Bacteria 156 9.49e-43   NR WP_303678546.1 1528099 g15794 i0 100 1.97530864197531 80 0 98.8 0 242 3 98 177 WP_303678546.1 DEAD/DEAH box helicase [Lawsonella clevelandensis] diamond 480 156 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
26687513 26687513 PRJNA1073712_P_NODE_12781_length_248_cov_0.880000_g12698_i0 PRJNA1073712 12781 248 0.88 2.1824 Micrococcus flavus 384602 Bacteria Bacteria 149 1.0599999999999999e-42   NR WP_135030884.1 384602 g12698 i0 96.3 0.991935483870968 82 3 99.2 0 246 1 79 160 WP_135030884.1 TrmH family RNA methyltransferase, partial [Micrococcus flavus] diamond 246 149 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus flavus
27067336 27067336 PRJNA1073712_P_NODE_2722_length_406_cov_2.411411_g2639_i0 PRJNA1073712 2722 406 2.411411 9.79032866 Allokutzneria multivorans 1142134 Bacteria Bacteria 82.8 1.63e-15   NR WP_344870428.1 1142134 g2639 i0 45.5 0.650246305418719 88 48 65 0 378 115 80 167 WP_344870428.1 FAD-binding oxidoreductase [Allokutzneria multivorans] diamond 264 82.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Allokutzneria Allokutzneria multivorans
27446876 27446876 PRJNA1073712_P_NODE_11163_length_251_cov_0.865169_g11080_i0 PRJNA1073712 11163 251 0.865169 2.17157419 Candidatus Lumbricidophila eiseniae 1969409 Bacteria Bacteria 48.9 2.8e-4   NR PDQ35477.1 1969409 g11080 i0 32.1 2.84462151394422 78 43 93.2 1 18 251 208 275 PDQ35477.1 MAG: hypothetical protein B5766_05255 [Candidatus Lumbricidophila eiseniae] diamond 714 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Candidatus Lumbricidiphila Candidatus Lumbricidiphila eiseniae
27762628 27762628 PRJNA1073712_P_NODE_16284_length_242_cov_0.911243_g16201_i0 PRJNA1073712 16284 242 0.911243 2.20520806 Brachybacterium muris 219301 Bacteria Bacteria 140 8.2e-40   NR WP_017824789.1 219301 g16201 i0 100 0.84297520661157 68 0 84.3 0 241 38 151 218 WP_017824789.1 class I SAM-dependent methyltransferase [Brachybacterium muris] diamond 204 140 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium muris
28583470 28583470 PRJNA1073712_P_NODE_13327_length_247_cov_0.885057_g13244_i0 PRJNA1073712 13327 247 0.885057 2.18609079 Lawsonella clevelandensis 1528099 Bacteria Bacteria 170 5.02e-47   NR WP_303678914.1 1528099 g13244 i0 100 0.995951417004049 82 0 99.6 0 246 1 113 194 WP_303678914.1 UPF0182 family protein [Lawsonella clevelandensis] diamond 246 170 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
28898859 28898859 PRJNA1073712_P_NODE_15828_length_243_cov_0.905882_g15745_i0 PRJNA1073712 15828 243 0.905882 2.20129326 uncultured Corynebacterium sp. 159447 Bacteria Bacteria 157 7.41e-45   NR WP_293791409.1 159447 g15745 i0 100 1 81 0 100 0 243 1 80 160 WP_293791409.1 ADP-ribosylglycohydrolase family protein [uncultured Corynebacterium sp.] diamond 243 157 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium uncultured Corynebacterium sp.
28930675 28930675 PRJNA1073712_P_NODE_14688_length_245_cov_0.895349_g14605_i0 PRJNA1073712 14688 245 0.895349 2.19360505 unclassified Trueperella 2630174 Bacteria Bacteria 117 2.15e-32   NR WP_411297240.1 2630174 g14605 i0 93.3 5.22857142857143 60 4 73.5 0 2 181 20 79 WP_411297240.1 MULTISPECIES: autonomous glycyl radical cofactor GrcA2 [unclassified Trueperella] diamond 1281 117 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Trueperella  
28994051 28994051 PRJNA1073712_P_NODE_16108_length_242_cov_0.911243_g16025_i0 PRJNA1073712 16108 242 0.911243 2.20520806 Micrococcus lacusdianchii 2915940 Bacteria Bacteria 153 2.1799999999999996e-41   NR WP_248122545.1 2915940 g16025 i0 98.8 0.991735537190083 80 1 99.2 0 3 242 352 431 WP_248122545.1 TRAP transporter permease [Micrococcus lacusdianchii] diamond 240 153 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus lacusdianchii
29246308 29246308 PRJNA1073712_P_NODE_4009_length_357_cov_3.517606_g3926_i0 PRJNA1073712 4009 357 3.517606 12.55785342 Cutibacterium acnes 1747 Bacteria Bacteria 93.6 2.5300000000000003e-22   NR MES8350298.1 1747 g3926 i0 73.2 0.689075630252101 82 22 68.9 0 15 260 2 83 MES8350298.1 hypothetical protein [Cutibacterium acnes] diamond 246 93.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
29561956 29561956 PRJNA1073712_P_NODE_16410_length_242_cov_0.911243_g16327_i0 PRJNA1073712 16410 242 0.911243 2.20520806 Frankiaceae bacterium 2654182 Bacteria Bacteria 145 4.3e-41   NR HEX4428687.1 2654182 g16327 i0 87.5 0.991735537190083 80 10 99.2 0 242 3 11 90 HEX4428687.1 enoyl-CoA hydratase/isomerase family protein [Frankiaceae bacterium] diamond 240 145 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae   Frankiaceae bacterium
30257336 30257336 PRJNA1073712_P_NODE_7592_length_287_cov_1.308411_g7509_i0 PRJNA1073712 7592 287 1.308411 3.75513957 Lawsonella 1847725 Bacteria Bacteria 213 9.93e-62   NR WP_290598420.1 1847725 g7509 i0 98.9 0.993031358885017 95 1 99.3 0 285 1 438 532 WP_290598420.1 MULTISPECIES: isoleucine--tRNA ligase [Lawsonella] diamond 285 213 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
30415310 30415310 PRJNA1073712_P_NODE_15453_length_243_cov_1.582353_g15370_i0 PRJNA1073712 15453 243 1.582353 3.84511779 Mycobacteroides abscessus subsp. abscessus 1185650 Bacteria Bacteria 47.8 6.45e-4   NR SIA29034.1 1185650 g15370 i0 74.1 0.666666666666667 54 13 66.7 1 162 1 150 202 SIA29034.1 Collagen triple helix repeat (20 copies) [Mycobacteroides abscessus subsp. abscessus] diamond 162 47.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus
30595876 30595876 PRJNA1073712_P_NODE_16933_length_241_cov_0.916667_g16850_i0 PRJNA1073712 16933 241 0.916667 2.20916747 Saccharopolyspora 1835 Bacteria Bacteria 97.4 8.02e-22   NR WP_358441344.1 3155924 g16850 i0 80.4 1.39419087136929 56 11 69.7 0 241 74 293 348 WP_358441344.1 hypothetical protein [Saccharopolyspora sp. NPDC047091] diamond 336 97.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora sp. NPDC047091
30730890 30730890 PRJNA1073712_P_NODE_12034_length_250_cov_0.870056_g11951_i0 PRJNA1073712 12034 250 0.870056 2.17514 Schaalia dentiphila 3050224 Bacteria Bacteria 156 1.01e-45   NR WP_208853686.1 3050224 g11951 i0 96.4 0.996 83 3 99.6 0 250 2 63 145 WP_208853686.1 hypothetical protein [Schaalia dentiphila] diamond 249 156 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia dentiphila
30983850 30983850 PRJNA1073712_P_NODE_12494_length_249_cov_0.875000_g12411_i0 PRJNA1073712 12494 249 0.875 2.17875 Actinomyces viscosus 1656 Bacteria Bacteria 76.3 1.42e-14   NR VEI15844.1 1656 g12411 i0 74 0.602409638554217 50 13 60.2 0 100 249 94 143 VEI15844.1 Transposase and inactivated derivatives [Actinomyces viscosus] diamond 150 76.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces viscosus
31774073 31774073 PRJNA1073712_P_NODE_16757_length_241_cov_0.916667_g16674_i0 PRJNA1073712 16757 241 0.916667 2.20916747 Bifidobacteriales bacterium 2478472 Bacteria Bacteria 143 1.47e-41   NR MCT6839527.1 2478472 g16674 i0 97.4 0.946058091286307 76 2 94.6 0 239 12 90 165 MCT6839527.1 phosphoenolpyruvate--protein phosphotransferase [Bifidobacteriales bacterium] diamond 228 143 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales     Bifidobacteriales bacterium
31805756 31805756 PRJNA1073712_P_NODE_14157_length_246_cov_0.890173_g14074_i0 PRJNA1073712 14157 246 0.890173 2.18982558 Lawsonella clevelandensis 1528099 Bacteria Bacteria 153 1.4099999999999999e-42   NR WP_394268086.1 1528099 g14074 i0 98.8 0.975609756097561 80 1 97.6 0 2 241 78 157 WP_394268086.1 ABC transporter permease [Lawsonella clevelandensis] diamond 240 153 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
31868978 31868978 PRJNA1073712_P_NODE_14217_length_246_cov_0.884393_g14134_i0 PRJNA1073712 14217 246 0.884393 2.17560678 Peptidiphaga gingivicola 2741497 Bacteria Bacteria 149 3.81e-40   NR WP_064230970.1 2741497 g14134 i0 97.6 1 82 2 100 0 1 246 27 108 WP_064230970.1 ABC transporter ATP-binding protein [Peptidiphaga gingivicola] diamond 246 149 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Peptidiphaga Peptidiphaga gingivicola
31900701 31900701 PRJNA1073712_P_NODE_13897_length_246_cov_0.890173_g13814_i0 PRJNA1073712 13897 246 0.890173 2.18982558 Brachybacterium muris 219301 Bacteria Bacteria 66.6 7.92e-11   NR WP_017823428.1 219301 g13814 i0 100 0.475609756097561 39 0 47.6 0 102 218 1 39 WP_017823428.1 CPBP family intramembrane glutamic endopeptidase [Brachybacterium muris] diamond 117 66.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium muris
32407031 32407031 PRJNA1073712_P_NODE_11179_length_251_cov_0.865169_g11096_i0 PRJNA1073712 11179 251 0.865169 2.17157419 Kocuria sp. ICS 1871328 Bacteria Bacteria 47.4 9.64e-4   NR WP_082943392.1 1834155 g11096 i0 36.4 0.788844621513944 66 42 78.9 0 10 207 579 644 WP_082943392.1 KAP family NTPase [Kocuria sp. ICS0012] diamond 198 47.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. ICS0012
32470461 32470461 PRJNA1073712_P_NODE_12779_length_248_cov_0.880000_g12696_i0 PRJNA1073712 12779 248 0.88 2.1824 Micrococcus lacusdianchii 2915940 Bacteria Bacteria 126 2.4699999999999996e-32   NR WP_248124012.1 2915940 g12696 i0 91.8 2.6491935483871 73 6 88.3 0 28 246 96 168 WP_248124012.1 dicarboxylate/amino acid:cation symporter [Micrococcus lacusdianchii] diamond 657 126 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus lacusdianchii
32627963 32627963 PRJNA1073712_P_NODE_11920_length_250_cov_0.870056_g11837_i0 PRJNA1073712 11920 250 0.870056 2.17514 Mycolicibacterium iranicum 912594 Bacteria Bacteria 113 1.8e-29   NR WP_234814124.1 912594 g11837 i0 100 0.744 62 0 74.4 0 186 1 1 62 WP_234814124.1 hypothetical protein [Mycolicibacterium iranicum] diamond 186 113 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium iranicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;