RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1073712" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073712 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27888559 27888559 PRJNA1073712_P_NODE_15565_length_243_cov_0.905882_g15482_i0 PRJNA1073712 15565 243 0.905882 2.20129326 Acidobacteriota bacterium 1978231 Bacteria Bacteria 101 3.11e-23   NR HYK89533.1 1978231 g15482 i0 55.6 1 81 35 98.8 1 2 241 143 223 HYK89533.1 metallophosphoesterase [Acidobacteriota bacterium] diamond 243 101 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29404251 29404251 PRJNA1073712_P_NODE_10069_length_261_cov_1.638298_g9986_i0 PRJNA1073712 10069 261 1.638298 4.27595778 Terracidiphilus sp. 1964191 Bacteria Bacteria 50.4 6.14e-5   NR HKF46579.1 1964191 g9986 i0 67.7 0.35632183908046 31 10 35.6 0 168 260 107 137 HKF46579.1 hypothetical protein [Terracidiphilus sp.] diamond 93 50.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
29972602 29972602 PRJNA1073712_P_NODE_7511_length_288_cov_1.306977_g7428_i0 PRJNA1073712 7511 288 1.306977 3.76409376 Acidobacteriota bacterium 1978231 Bacteria Bacteria 64.7 8.49e-10   NR MEL7058707.1 1978231 g7428 i0 41.3 0.78125 75 44 78.1 0 227 3 22 96 MEL7058707.1 alpha/beta hydrolase [Acidobacteriota bacterium] diamond 225 64.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32185564 32185564 PRJNA1073712_P_NODE_4438_length_345_cov_2.452206_g4355_i0 PRJNA1073712 4438 345 2.452206 8.4601107 Edaphobacter sp. 1934404 Bacteria Bacteria 43.9 0.0324   NR HWW23135.1 1934404 g4355 i0 33.7 0.878260869565217 101 66 87.8 1 327 25 95 194 HWW23135.1 FAD:protein FMN transferase [Edaphobacter sp.] diamond 303 43.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;