RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1073712" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1073712 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30469873 30469873 PRJNA1073712_P_NODE_14733_length_245_cov_0.895349_g14650_i0 PRJNA1073712 14733 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 73.9 7.19e-14   NR WP_121957087.1 1434328 g14650 i0 47.4 6.64897959183673 76 37 89.4 1 242 24 76 151 WP_121957087.1 adenylate kinase [Petrotoga sp. 9PWA.NaAc.5.4] diamond 1629 73.9 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga sp. 9PWA.NaAc.5.4
32249095 32249095 PRJNA1073712_P_NODE_17018_length_241_cov_0.916667_g16935_i0 PRJNA1073712 17018 241 0.916667 2.20916747 Deinococcus fonticola 2528713 Bacteria Bacteria 150 1.1499999999999999e-42   NR WP_135230581.1 2528713 g16935 i0 97.5 0.983402489626556 79 2 98.3 0 239 3 86 164 WP_135230581.1 hypothetical protein [Deinococcus fonticola] diamond 237 150 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus fonticola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;