RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1073712" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA1073712 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27098978 27098978 PRJNA1073712_P_NODE_4062_length_356_cov_1.632509_g3979_i0 PRJNA1073712 4062 356 1.632509 5.81173204 Citrus leaf blotch virus 129141 Viruses Viruses 230 9.96e-73   NR NP_624334.1 129141 g3979 i0 99.2 2.98314606741573 118 1 99.4 0 356 3 75 192 NP_624334.1 movement protein [Citrus leaf blotch virus] diamond 1062 230 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
27920176 27920176 PRJNA1073712_P_NODE_2205_length_437_cov_2.417582_g2122_i0 PRJNA1073712 2205 437 2.417582 10.56483334 Citrus leaf blotch virus 129141 Viruses Viruses 297 2.67e-90   NR WHN55394.1 129141 g2122 i0 97.2 4.97711670480549 145 4 99.5 0 436 2 269 413 WHN55394.1 polyprotein [Citrus leaf blotch virus] diamond 2175 297 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
28299053 28299053 PRJNA1073712_P_NODE_3346_length_381_cov_1.402597_g3263_i0 PRJNA1073712 3346 381 1.402597 5.34389457 Citrus leaf blotch virus 129141 Viruses Viruses 241 5.44e-71   NR WHN55394.1 129141 g3263 i0 92.1 4.96062992125984 126 10 99.2 0 379 2 925 1050 WHN55394.1 polyprotein [Citrus leaf blotch virus] diamond 1890 241 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;