RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1073183" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073183 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1461622 1461622 PRJNA1073183_P_NODE_13562_length_352_cov_1.383513_g13467_i0 PRJNA1073183 13562 352 1.383513 4.86996576 Leptospiraceae bacterium 2026757 Bacteria Bacteria 145 8.689999999999997e-42   NR HNO24933.1 2026757 g13467 i0 75.8 0.84375 99 24 84.4 0 352 56 49 147 HNO24933.1 Hsp70 family protein [Leptospiraceae bacterium] diamond 297 145 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
12940909 12940909 PRJNA1073183_P_NODE_20111_length_291_cov_1.963303_g20016_i0 PRJNA1073183 20111 291 1.963303 5.71321173 Leptospiraceae bacterium 2026757 Bacteria Bacteria 164 1.89e-49   NR HNO24933.1 2026757 g20016 i0 85.3 0.979381443298969 95 14 97.9 0 2 286 27 121 HNO24933.1 Hsp70 family protein [Leptospiraceae bacterium] diamond 285 164 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
28646541 28646541 PRJNA1073183_P_NODE_19847_length_293_cov_1.809091_g19752_i0 PRJNA1073183 19847 293 1.809091 5.30063663 Leptospiraceae bacterium 2026757 Bacteria Bacteria 116 9.36e-31   NR HNO24933.1 2026757 g19752 i0 94 0.686006825938567 67 4 68.6 0 293 93 81 147 HNO24933.1 Hsp70 family protein [Leptospiraceae bacterium] diamond 201 116 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
32122368 32122368 PRJNA1073183_P_NODE_25818_length_254_cov_1.535912_g25723_i0 PRJNA1073183 25818 254 1.535912 3.90121648 Spirochaeta sp. 28185 Bacteria Bacteria 75.5 1.25e-13   NR MAI27640.1 28185 g25723 i0 45.5 3.61417322834646 77 41 90.9 1 1 231 82 157 MAI27640.1 amidohydrolase [Spirochaeta sp.] diamond 918 75.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;