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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA1073183" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 31 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073183 · 31 ✖

analysis 1

  • diamond · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8669269 8669269 PRJNA1073183_P_NODE_23247_length_271_cov_1.328283_g23152_i0 PRJNA1073183 23247 271 1.328283 3.59964693 Lawsonella clevelandensis 1528099 Bacteria Bacteria 174 2.58e-49   NR WP_053962292.1 1528099 g23152 i0 92.2 0.996309963099631 90 7 99.6 0 270 1 94 183 WP_053962292.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [Lawsonella clevelandensis] diamond 270 174 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
9114850 9114850 PRJNA1073183_P_NODE_23868_length_267_cov_1.314433_g23773_i0 PRJNA1073183 23868 267 1.314433 3.50953611 Micrococcus endophyticus 455343 Bacteria Bacteria 130 3.39e-33   NR WP_184171723.1 455343 g23773 i0 96.8 2.12359550561798 63 2 70.8 0 1 189 460 522 WP_184171723.1 gamma-glutamyltransferase family protein [Micrococcus endophyticus] diamond 567 130 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus endophyticus
10390508 10390508 PRJNA1073183_P_NODE_23969_length_266_cov_2.113990_g23874_i0 PRJNA1073183 23969 266 2.11399 5.6232134 Micrococcus terreus 574650 Bacteria Bacteria 175 2.42e-53   NR WP_260061326.1 574650 g23874 i0 97.7 0.992481203007519 88 2 99.2 0 2 265 27 114 WP_260061326.1 uracil-DNA glycosylase [Micrococcus terreus] diamond 264 175 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus terreus
11665709 11665709 PRJNA1073183_P_NODE_13950_length_348_cov_0.890909_g13855_i0 PRJNA1073183 13950 348 0.890909 3.10036332 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 170 1.11e-51   NR MCP3885490.1 2021380 g13855 i0 76.7 0.887931034482759 103 24 88.8 0 312 4 3 105 MCP3885490.1 translation initiation factor IF-5A [Propionibacteriaceae bacterium] diamond 309 170 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
16764082 16764082 PRJNA1073183_P_NODE_19954_length_293_cov_1.050000_g19859_i0 PRJNA1073183 19954 293 1.05 3.0765 Rhabdothermincola 2820403 Bacteria Bacteria 134 3.28e-38   NR HVJ97428.1 2080302 g19859 i0 68 41.1399317406143 97 27 99.3 1 3 293 27 119 HVJ97428.1 adenosylhomocysteinase [Acidimicrobiia bacterium] diamond 12054 135 0.992592592592593 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
27216676 27216676 PRJNA1073183_P_NODE_33142_length_243_cov_0.905882_g33047_i0 PRJNA1073183 33142 243 0.905882 2.20129326 Rhodoglobus 193383 Bacteria Bacteria 70.1 4.41e-12   NR HQG70645.1 1950123 g33047 i0 94.4 1.77777777777778 36 2 44.4 0 242 135 248 283 HQG70645.1 DNA polymerase IV [Rhodoglobus sp.] diamond 432 70.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoglobus Rhodoglobus sp.
28015114 28015114 PRJNA1073183_P_NODE_9085_length_425_cov_0.832386_g8991_i0 PRJNA1073183 9085 425 0.832386 3.5376405 Actinomycetota bacterium 2900548 Bacteria Bacteria 73.9 2.73e-12   NR MBS1890115.1 2900548 g8991 i0 36.5 0.734117647058824 104 61 69.9 3 81 377 220 323 MBS1890115.1 hypothetical protein [Actinomycetota bacterium] diamond 312 73.9 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28141489 28141489 PRJNA1073183_P_NODE_7605_length_462_cov_3.000000_g7511_i0 PRJNA1073183 7605 462 3 13.86 Lawsonella 1847725 Bacteria Bacteria 268 3.58e-83   NR WP_290595276.1 1847725 g7511 i0 99.2 0.811688311688312 125 1 81.2 0 29 403 381 505 WP_290595276.1 MULTISPECIES: primosomal protein N' [Lawsonella] diamond 375 268 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
28448727 28448727 PRJNA1073183_P_NODE_30386_length_246_cov_0.890173_g30291_i0 PRJNA1073183 30386 246 0.890173 2.18982558 Rothia 32207 Bacteria Bacteria 127 3.919999999999999e-34   NR MBS4946579.1 43675 g30291 i0 100 1.58536585365854 65 0 79.3 0 245 51 202 266 MBS4946579.1 acyltransferase [Rothia mucilaginosa] diamond 390 127 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa
28551875 28551875 PRJNA1073183_P_NODE_24447_length_263_cov_1.615789_g24352_i0 PRJNA1073183 24447 263 1.615789 4.24952507 unclassified Streptomyces 2593676 Bacteria Bacteria 80.1 3.44e-15   NR WP_145799872.1 2593676 g24352 i0 51.9 0.923954372623574 81 34 90.1 3 262 26 135 212 WP_145799872.1 MULTISPECIES: S8 family serine peptidase [unclassified Streptomyces] diamond 243 80.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
28678154 28678154 PRJNA1073183_P_NODE_30587_length_246_cov_0.890173_g30492_i0 PRJNA1073183 30587 246 0.890173 2.18982558 Streptomyces griseosporeus 1910 Bacteria Bacteria 42.7 0.0402   NR WP_391681147.1 1910 g30492 i0 45.6 0.695121951219512 57 30 68.3 1 201 34 278 334 WP_391681147.1 caspase, EACC1-associated type [Streptomyces griseosporeus] diamond 171 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseosporeus
28804059 28804059 PRJNA1073183_P_NODE_31608_length_244_cov_2.701754_g31513_i0 PRJNA1073183 31608 244 2.701754 6.59227976 Euzebya sp. 1971409 Bacteria Bacteria 42.4 0.0498   NR WP_370323898.1 1971409 g31513 i0 33.8 0.909836065573771 74 49 91 0 232 11 191 264 WP_370323898.1 adenosine deaminase [Euzebya sp.] diamond 222 42.4 1 Bacteria   Bacillati Actinomycetota Nitriliruptoria Euzebyales Euzebyaceae Euzebya Euzebya sp.
28921966 28921966 PRJNA1073183_P_NODE_24168_length_265_cov_1.395833_g24073_i0 PRJNA1073183 24168 265 1.395833 3.69895745 Brachybacterium 43668 Bacteria Bacteria 150 9.45e-45   NR WP_126988379.1 43668 g24073 i0 93.2 1.99245283018868 88 6 99.6 0 264 1 3 90 WP_126988379.1 MULTISPECIES: hypothetical protein [Brachybacterium] diamond 528 150 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium  
29088556 29088556 PRJNA1073183_P_NODE_25668_length_255_cov_1.631868_g25573_i0 PRJNA1073183 25668 255 1.631868 4.1612634 Ilumatobacter sp. 1967498 Bacteria Bacteria 43.1 0.0299   NR NKB41104.1 1967498 g25573 i0 39.1 1.04705882352941 46 28 54.1 0 115 252 26 71 NKB41104.1 hypothetical protein [Ilumatobacter sp.] diamond 267 43.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae Ilumatobacter Ilumatobacter sp.
29088559 29088559 PRJNA1073183_P_NODE_31048_length_245_cov_0.895349_g30953_i0 PRJNA1073183 31048 245 0.895349 2.19360505 Labedaea sp. 3100858 Bacteria Bacteria 71.2 2.01e-12   NR MFL6142293.1 3100858 g30953 i0 48.5 2.59591836734694 68 34 83.3 1 233 30 233 299 MFL6142293.1 cation diffusion facilitator family transporter [Labedaea sp.] diamond 636 71.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Labedaea Labedaea sp.
29372666 29372666 PRJNA1073183_P_NODE_34129_length_241_cov_0.916667_g34034_i0 PRJNA1073183 34129 241 0.916667 2.20916747 Actinomycetota bacterium 2900548 Bacteria Bacteria 147 6.62e-40   NR MSY84662.1 2900548 g34034 i0 98.7 0.983402489626556 79 1 98.3 0 239 3 416 494 MSY84662.1 hypothetical protein [Actinomycetota bacterium] diamond 237 147 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29498873 29498873 PRJNA1073183_P_NODE_24270_length_264_cov_2.041885_g24175_i0 PRJNA1073183 24270 264 2.041885 5.3905764 Gaiellaceae bacterium 2838783 Bacteria Bacteria 67.4 6.53e-11   NR MFL5958679.1 2838783 g24175 i0 56.4 7.75 55 23 62.5 1 245 81 245 298 MFL5958679.1 NlpC/P60 family protein [Gaiellaceae bacterium] diamond 2046 67.4 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
29530568 29530568 PRJNA1073183_P_NODE_21350_length_284_cov_0.900474_g21255_i0 PRJNA1073183 21350 284 0.900474 2.55734616 Actinomycetota bacterium 2900548 Bacteria Bacteria 43.9 0.0182   NR MBS1889827.1 2900548 g21255 i0 63.6 0.348591549295775 33 12 34.9 0 282 184 184 216 MBS1889827.1 DUF2816 domain-containing protein [Actinomycetota bacterium] diamond 99 43.9 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29561944 29561944 PRJNA1073183_P_NODE_23990_length_266_cov_1.595855_g23895_i0 PRJNA1073183 23990 266 1.595855 4.2449743 Actinomycetota bacterium 2900548 Bacteria Bacteria 45.1 0.00765   NR MBS1889663.1 2900548 g23895 i0 32.6 3.81203007518797 86 57 97 1 264 7 688 772 MBS1889663.1 hypothetical protein [Actinomycetota bacterium] diamond 1014 45.1 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29846264 29846264 PRJNA1073183_P_NODE_17611_length_312_cov_1.259414_g17516_i0 PRJNA1073183 17611 312 1.259414 3.92937168 Lawsonella 1847725 Bacteria Bacteria 108 2.87e-28   NR WP_290598419.1 1847725 g17516 i0 100 0.557692307692308 58 0 55.8 0 16 189 1 58 WP_290598419.1 MULTISPECIES: hypothetical protein [Lawsonella] diamond 174 108 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
30509725 30509725 PRJNA1073183_P_NODE_34553_length_241_cov_0.916667_g34458_i0 PRJNA1073183 34553 241 0.916667 2.20916747 Gryllotalpicola koreensis 993086 Bacteria Bacteria 126 4.82e-32   NR WP_344756286.1 993086 g34458 i0 85 0.995850622406639 80 12 99.6 0 2 241 293 372 WP_344756286.1 iron uptake transporter permease EfeU [Gryllotalpicola koreensis] diamond 240 126 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Gryllotalpicola Gryllotalpicola koreensis
30754041 30754041 PRJNA1073183_P_NODE_26914_length_251_cov_0.865169_g26819_i0 PRJNA1073183 26914 251 0.865169 2.17157419 PVC group 1783257 Bacteria Bacteria 100 6.3299999999999995e-25   NR WP_188306851.1 1896313 g26819 i0 57.8 7.91235059760956 83 35 99.2 0 251 3 10 92 WP_188306851.1 glycine cleavage system protein GcvH [Streptomyces sp. CBMA123] diamond 1986 100 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CBMA123
30785592 30785592 PRJNA1073183_P_NODE_30254_length_246_cov_0.890173_g30159_i0 PRJNA1073183 30254 246 0.890173 2.18982558 Pseudonocardia 1847 Bacteria Bacteria 155 5.25e-46   NR ALE74386.1 1096868 g30159 i0 91.4 2.96341463414634 81 7 98.8 0 2 244 107 187 ALE74386.1 NUDIX hydrolase [Pseudonocardia sp. EC080625-04] diamond 729 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. EC080625-04
31268106 31268106 PRJNA1073183_P_NODE_15375_length_333_cov_0.873077_g15280_i0 PRJNA1073183 15375 333 0.873077 2.90734641 Actinokineospora sp. 1872133 Bacteria Bacteria 58.2 4.14e-7   NR HVK20192.1 1872133 g15280 i0 43.5 1.22522522522523 69 37 60.4 2 217 17 778 846 HVK20192.1 alpha-L-fucosidase [Actinokineospora sp.] diamond 408 58.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora sp.
31521235 31521235 PRJNA1073183_P_NODE_24456_length_263_cov_1.573684_g24361_i0 PRJNA1073183 24456 263 1.573684 4.13878892 Actinoplanes sp. NBRC 1 1871 Bacteria Bacteria 75.9 3.2e-15   NR WP_285687341.1 3032202 g24361 i0 49.3 0.787072243346008 69 35 78.7 0 217 11 1 69 WP_285687341.1 hypothetical protein [Actinoplanes sp. NBRC 103695] diamond 207 75.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes sp. NBRC 103695
31679142 31679142 PRJNA1073183_P_NODE_12877_length_361_cov_1.069444_g12782_i0 PRJNA1073183 12877 361 1.069444 3.86069284 Streptomyces sp. HUAS YS2 3081768 Bacteria Bacteria 102 1.34e-22   NR WP_318107527.1 3081768 g12782 i0 48.4 2.70914127423823 122 48 94.7 5 343 2 131 245 WP_318107527.1 S8 family serine peptidase [Streptomyces sp. HUAS YS2] diamond 978 102 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces solicathayae
31679145 31679145 PRJNA1073183_P_NODE_21557_length_282_cov_1.473684_g21462_i0 PRJNA1073183 21557 282 1.473684 4.15578888 Actinomycetota bacterium 2900548 Bacteria Bacteria 89.4 2.52e-19   NR HJP65631.1 2900548 g21462 i0 47.3 1.97872340425532 93 48 98.9 1 1 279 86 177 HJP65631.1 M15 family metallopeptidase [Actinomycetota bacterium] diamond 558 89.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32312345 32312345 PRJNA1073183_P_NODE_29139_length_248_cov_0.880000_g29044_i0 PRJNA1073183 29139 248 0.88 2.1824 Mycolicibacterium obuense 1807 Bacteria Bacteria 163 2.95e-45   NR WP_236728558.1 1807 g29044 i0 98.8 0.991935483870968 82 1 99.2 0 2 247 128 209 WP_236728558.1 hypothetical protein [Mycolicibacterium obuense] diamond 246 163 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium obuense
32343899 32343899 PRJNA1073183_P_NODE_13419_length_354_cov_1.096085_g13324_i0 PRJNA1073183 13419 354 1.096085 3.8801409 Lawsonella clevelandensis 1528099 Bacteria Bacteria 219 6.08e-70   NR WP_373567068.1 1528099 g13324 i0 100 0.991525423728814 117 0 99.2 0 2 352 39 155 WP_373567068.1 ribosome hibernation-promoting factor, HPF/YfiA family [Lawsonella clevelandensis] diamond 351 219 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
32438848 32438848 PRJNA1073183_P_NODE_7759_length_458_cov_1.132468_g7665_i0 PRJNA1073183 7759 458 1.132468 5.18670344 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 142 2.67e-36   NR HUC35605.1 2201156 g7665 i0 49 1.97161572052402 151 74 96.9 3 456 13 428 578 HUC35605.1 choice-of-anchor Q domain-containing protein [Acidimicrobiales bacterium] diamond 903 142 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
32785440 32785440 PRJNA1073183_P_NODE_3600_length_662_cov_1.103565_g3512_i0 PRJNA1073183 3600 662 1.103565 7.3056003 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 147 2.17e-37   NR HUC35605.1 2201156 g3512 i0 51.8 0.638972809667674 141 66 63 2 662 246 438 578 HUC35605.1 choice-of-anchor Q domain-containing protein [Acidimicrobiales bacterium] diamond 423 147 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;