RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1072736" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1072736 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29561933 29561933 PRJNA1072736_S_NODE_6230_length_162_cov_1.218487_g6225_i0 PRJNA1072736 6230 162 1.218487 1.97394894 Actinomycetota bacterium 2900548 Bacteria Bacteria 43.5 0.00305   NR MBW3537026.1 2900548 g6225 i0 38.6 0.814814814814815 44 27 81.5 0 155 24 79 122 MBW3537026.1 transcriptional repressor [Actinomycetota bacterium] diamond 132 43.5 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30446708 30446708 PRJNA1072736_S_NODE_5213_length_173_cov_1.392308_g5208_i0 PRJNA1072736 5213 173 1.392308 2.40869284 Piscicoccus intestinalis 746033 Bacteria Bacteria 42.4 0.0197   NR WP_068430052.1 746033 g5208 i0 47.5 0.69364161849711 40 21 69.4 0 45 164 205 244 WP_068430052.1 universal stress protein [Piscicoccus intestinalis] diamond 120 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Piscicoccus Piscicoccus intestinalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;