RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1069776" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA1069776 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3565297 3565297 PRJNA1069776_S_NODE_403_length_2095_cov_48.130117_g395_i0 PRJNA1069776 403 2095 48.130117 1008.32595115 Moloney murine leukemia virus 11801 Viruses Viruses 1281 0   NR NP_057933.2 11801 g395 i0 97.4 2.81384248210024 655 17 93.8 0 1969 5 677 1331 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5895 1281 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
9112664 9112664 PRJNA1069776_S_NODE_6808_length_344_cov_2.295681_g6494_i0 PRJNA1069776 6808 344 2.295681 7.89714264 Marsupial endogenous gammaretrovirus 2 3386030 Viruses Viruses 135 3.6399999999999997e-34   NR DBA62711.1 3386030 g6494 i0 56.6 0.98546511627907 113 49 98.5 0 344 6 922 1034 DBA62711.1 TPA_asm: Pol [Marsupial endogenous gammaretrovirus 2] diamond 339 135 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 2
18866289 18866289 PRJNA1069776_S_NODE_415_length_1951_cov_49.801887_g395_i1 PRJNA1069776 415 1951 49.801887 971.63481537 Moloney murine leukemia virus 11801 Viruses Viruses 1122 0   NR NP_057933.2 11801 g395 i1 97.6 2.64325986673501 573 14 88.1 0 229 1947 759 1331 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5157 1122 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;