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contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA1068830" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1068830 · 29 ✖

analysis 1

  • diamond · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6560566 6560566 PRJNA1068830_P_NODE_37166_length_367_cov_2.384354_g36463_i0 PRJNA1068830 37166 367 2.384354 8.75057918 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 135 6.52e-37   NR RCN41913.1 29170 g36463 i0 63 68.6076294277929 100 37 81.7 0 365 66 125 224 RCN41913.1 ADP-ribosylation factor family protein, partial [Ancylostoma caninum] diamond 25179 136 0.992647058823529 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
15486325 15486325 PRJNA1068830_P_NODE_77293_length_250_cov_0.881356_g76590_i0 PRJNA1068830 77293 250 0.881356 2.20339 Metazoa 33208 Nematoda Nematoda 119 2.73e-29   NR XP_002641359.1 6238 g76590 i0 66.7 41.16 84 27 99.6 1 249 1 160 243 XP_002641359.1 Protein CBR-RSKS-1 [Caenorhabditis briggsae] diamond 10290 120 0.991666666666667 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
17592019 17592019 PRJNA1068830_P_NODE_47194_length_320_cov_1.165992_g46491_i0 PRJNA1068830 47194 320 1.165992 3.7311744 Metazoa 33208 Nematoda Nematoda 140 7.71e-39   NR ULT84405.1 6238 g46491 i0 75.3 20.128125 85 21 79.7 0 256 2 64 148 ULT84405.1 hypothetical protein L3Y34_013227 [Caenorhabditis briggsae] diamond 6441 140 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
21859382 21859382 PRJNA1068830_P_NODE_34438_length_384_cov_2.247588_g33735_i0 PRJNA1068830 34438 384 2.247588 8.63073792 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 218 5.619999999999999e-67   NR NP_509313.1 6239 g33735 i0 84.7 571.3515625 124 19 96.9 0 2 373 158 281 NP_509313.1 Tubulin beta-1 chain [Caenorhabditis elegans] diamond 219399 219 0.995433789954338 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
21860595 21860595 PRJNA1068830_P_NODE_82738_length_246_cov_0.901734_g82035_i0 PRJNA1068830 82738 246 0.901734 2.21826564 Diploscapter pachys 2018661 Nematoda Nematoda 129 8.449999999999998e-35   NR PAV80225.1 2018661 g82035 i0 72.8 10.8414634146341 81 21 98.8 1 244 2 186 265 PAV80225.1 hypothetical protein WR25_22654 isoform B [Diploscapter pachys] diamond 2667 129 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
26647187 26647187 PRJNA1068830_P_NODE_89601_length_237_cov_2.182927_g88898_i0 PRJNA1068830 89601 237 2.182927 5.17353699 Metazoa 33208 Nematoda Nematoda 42.7 0.0341   NR KFD57086.1 68888 g88898 i0 34.8 1.75949367088608 69 41 82.3 1 210 16 273 341 KFD57086.1 hypothetical protein M513_01971 [Trichuris suis] diamond 417 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
26814247 26814247 PRJNA1068830_P_NODE_20521_length_526_cov_2.849890_g19820_i0 PRJNA1068830 20521 526 2.84989 14.9904214 Mesorhabditis belari 2138241 Nematoda Nematoda 146 9.62e-38   NR CAJ0924659.1 2138241 g19820 i0 48.7 5.54942965779468 152 77 86.1 1 74 526 22 173 CAJ0924659.1 unnamed protein product, partial [Mesorhabditis belari] diamond 2919 146 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
27090581 27090581 PRJNA1068830_P_NODE_90702_length_227_cov_3.623377_g89999_i0 PRJNA1068830 90702 227 3.623377 8.22506579 Metazoa 33208 Nematoda Nematoda 95.9 3.6499999999999996e-24   NR NP_001370541.1 6239 g89999 i0 71.7 12.7400881057269 60 17 79.3 0 23 202 6 65 NP_001370541.1 Small ribosomal subunit protein eS28 [Caenorhabditis elegans] diamond 2892 96.3 0.995846313603323 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27532835 27532835 PRJNA1068830_P_NODE_5443_length_1109_cov_3.834942_g4973_i0 PRJNA1068830 5443 1109 3.834942 42.52950678 Metazoa 33208 Nematoda Nematoda 714 4.24e-256   NR KAL1237559.1 6334 g4973 i0 95.9 120.481514878269 365 15 98.7 0 1097 3 1 365 KAL1237559.1 Actin-5C [Trichinella spiralis] diamond 133614 718 0.994428969359331 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
28015028 28015028 PRJNA1068830_P_NODE_24765_length_470_cov_1.209068_g24064_i0 PRJNA1068830 24765 470 1.209068 5.6826196 Thelazia callipaeda 103827 Nematoda Nematoda 93.6 7.97e-19   NR VDM97643.1 103827 g24064 i0 34.4 0.836170212765957 131 58 68.3 3 456 136 628 754 VDM97643.1 unnamed protein product [Thelazia callipaeda] diamond 393 93.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Thelaziidae Thelazia Thelazia callipaeda
28038149 28038149 PRJNA1068830_P_NODE_89605_length_237_cov_2.091463_g88902_i0 PRJNA1068830 89605 237 2.091463 4.95676731 Metazoa 33208 Nematoda Nematoda 127 5.75e-32   NR KJH43767.1 29172 g88902 i0 75.9 16 79 19 100 0 1 237 365 443 KJH43767.1 aconitate hydratase [Dictyocaulus viviparus] diamond 3792 127 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
28069600 28069600 PRJNA1068830_P_NODE_88245_length_242_cov_0.923077_g87542_i0 PRJNA1068830 88245 242 0.923077 2.23384634 Opisthokonta 33154 Nematoda Nematoda 84.7 6.04e-17   NR VDM36414.1 6265 g87542 i0 49.4 9.44628099173554 81 40 99.2 1 240 1 425 505 VDM36414.1 unnamed protein product [Toxocara canis] diamond 2286 85.1 0.995299647473561 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
28195757 28195757 PRJNA1068830_P_NODE_51866_length_303_cov_2.691304_g51163_i0 PRJNA1068830 51866 303 2.691304 8.15465112 Metazoa 33208 Nematoda Nematoda 55.5 2.58e-6   NR MFH4981174.1 75299 g51163 i0 47.7 1.14851485148515 44 23 43.6 0 303 172 324 367 MFH4981174.1 hypothetical protein [Gnathostoma spinigerum] diamond 348 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
28425498 28425498 PRJNA1068830_P_NODE_71106_length_255_cov_1.642857_g70403_i0 PRJNA1068830 71106 255 1.642857 4.18928535 Strongyloides ratti 34506 Nematoda Nematoda 48.9 2.54e-4   NR XP_024500188.1 34506 g70403 i0 32.1 1.96470588235294 84 57 98.8 0 253 2 193 276 XP_024500188.1 Porin, eukaryotic type family and Porin domain and Eukaryotic porin/Tom40 family-containing protein [Strongyloides ratti] diamond 501 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
28741077 28741077 PRJNA1068830_P_NODE_39567_length_354_cov_1.590747_g38864_i0 PRJNA1068830 39567 354 1.590747 5.63124438 Trichinella spiralis 6334 Nematoda Nematoda 119 4.79e-29   NR KAL1245556.1 6334 g38864 i0 48.7 8.74576271186441 115 59 97.5 0 352 8 167 281 KAL1245556.1 Beta-soluble NSF attachment protein [Trichinella spiralis] diamond 3096 119 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
28898798 28898798 PRJNA1068830_P_NODE_90268_length_231_cov_2.170886_g89565_i0 PRJNA1068830 90268 231 2.170886 5.01474666 Trichostrongylus colubriformis 6319 Nematoda Nematoda 63.2 8.15e-10   NR KAK5968948.1 6319 g89565 i0 40.5 0.961038961038961 74 41 92.2 1 17 229 118 191 KAK5968948.1 Inhibitor of growth protein [Trichostrongylus colubriformis] diamond 222 63.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis
28993976 28993976 PRJNA1068830_P_NODE_30788_length_411_cov_1.384615_g30085_i0 PRJNA1068830 30788 411 1.384615 5.69076765 Strongyloides ratti 34506 Nematoda Nematoda 136 6.41e-38   NR XP_024507086.1 34506 g30085 i0 52.5 2.56204379562044 118 54 86.1 1 356 3 34 149 XP_024507086.1 Glycine cleavage system H protein, mitochondrial [Strongyloides ratti] diamond 1053 136 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
29120202 29120202 PRJNA1068830_P_NODE_4689_length_1191_cov_65.721825_g4049_i1 PRJNA1068830 4689 1191 65.721825 782.74693575 Litomosoides sigmodontis 42156 Nematoda Nematoda 110 6.6500000000000005e-22   NR VDK72761.1 42156 g4049 i1 56.5 1.50377833753149 92 40 23.2 0 472 197 202 293 VDK72761.1 unnamed protein product [Litomosoides sigmodontis] diamond 1791 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Litomosoides Litomosoides sigmodontis
29277702 29277702 PRJNA1068830_P_NODE_77089_length_250_cov_0.881356_g76386_i0 PRJNA1068830 77089 250 0.881356 2.20339 Thelazia callipaeda 103827 Nematoda Nematoda 48.1 5.15e-4   NR VDM95767.1 103827 g76386 i0 37.7 0.828 69 37 75.6 2 58 246 354 422 VDM95767.1 unnamed protein product [Thelazia callipaeda] diamond 207 48.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Thelaziidae Thelazia Thelazia callipaeda
29530493 29530493 PRJNA1068830_P_NODE_4450_length_1221_cov_66.281359_g4049_i0 PRJNA1068830 4450 1221 66.281359 809.29539339 Litomosoides sigmodontis 42156 Nematoda Nematoda 110 7.86e-22   NR VDK72761.1 42156 g4049 i0 56.5 1.46683046683047 92 40 22.6 0 472 197 202 293 VDK72761.1 unnamed protein product [Litomosoides sigmodontis] diamond 1791 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Litomosoides Litomosoides sigmodontis
29593201 29593201 PRJNA1068830_P_NODE_55210_length_293_cov_1.418182_g54507_i0 PRJNA1068830 55210 293 1.418182 4.15527326 Diploscapter pachys 2018661 Nematoda Nematoda 127 4.32e-36   NR PAV63004.1 2018661 g54507 i0 69.3 1.77133105802048 88 26 90.1 1 293 30 3 89 PAV63004.1 hypothetical protein WR25_03895 [Diploscapter pachys] diamond 519 127 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
29711088 29711088 PRJNA1068830_P_NODE_23330_length_487_cov_2.067633_g22629_i0 PRJNA1068830 23330 487 2.067633 10.06937271 Rhabditida 6236 Nematoda Nematoda 57.4 6.54e-7   NR XP_003140976.1 7209 g22629 i0 31.3 1.19507186858316 96 66 59.1 0 308 21 55 150 XP_003140976.1 GDP-mannose pyrophosphorylase B [Loa loa] diamond 582 57.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
29869369 29869369 PRJNA1068830_P_NODE_26091_length_455_cov_1.306283_g25389_i0 PRJNA1068830 26091 455 1.306283 5.9435876499999996 Metazoa 33208 Nematoda Nematoda 182 2.779999999999999e-55   NR NP_499369.1 6239 g25389 i0 82 137.881318681319 100 18 65.9 0 300 1 39 138 NP_499369.1 GTP-binding nuclear protein ran-1 [Caenorhabditis elegans] diamond 62736 183 0.994535519125683 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
29909531 29909531 PRJNA1068830_P_NODE_82231_length_246_cov_0.901734_g81528_i0 PRJNA1068830 82231 246 0.901734 2.21826564 Pristionchus fissidentatus 1538716 Nematoda Nematoda 67.4 4.11e-12   NR GMT18625.1 1538716 g81528 i0 49.3 0.914634146341463 75 37 91.5 1 243 19 1 74 GMT18625.1 hypothetical protein PFISCL1PPCAC_9922 [Pristionchus fissidentatus] diamond 225 67.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
30098789 30098789 PRJNA1068830_P_NODE_44752_length_330_cov_1.214008_g44049_i0 PRJNA1068830 44752 330 1.214008 4.0062264 Dirofilaria immitis 6287 Nematoda Nematoda 75.9 2.46e-13   NR MCP9265611.1 6287 g44049 i0 42.2 0.990909090909091 109 59 98.2 3 330 7 482 587 MCP9265611.1 Parg protein [Dirofilaria immitis] diamond 327 75.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
30659208 30659208 PRJNA1068830_P_NODE_82533_length_246_cov_0.901734_g81830_i0 PRJNA1068830 82533 246 0.901734 2.21826564 Rhabditida 6236 Nematoda Nematoda 164 2.28e-49   NR VDP03997.1 6339 g81830 i0 96.3 7.90243902439024 81 3 98.8 0 244 2 91 171 VDP03997.1 unnamed protein product [Heligmosomoides polygyrus] diamond 1944 165 0.993939393939394 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
30785577 30785577 PRJNA1068830_P_NODE_29274_length_423_cov_2.402857_g28571_i0 PRJNA1068830 29274 423 2.402857 10.16408511 Metazoa 33208 Nematoda Nematoda 100 1.66e-21   NR CDJ89904.1 6289 g28571 i0 47.5 7.9290780141844 101 53 71.6 0 422 120 313 413 CDJ89904.1 Serine threonine protein kinase-related and Protein kinase domain containing protein [Haemonchus contortus] diamond 3354 101 0.99009900990099 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
30888813 30888813 PRJNA1068830_P_NODE_44854_length_329_cov_2.308594_g44151_i0 PRJNA1068830 44854 329 2.308594 7.59527426 Onchocerca ochengi 42157 Nematoda Nematoda 54.7 4.25e-6   NR VDM92692.1 42157 g44151 i0 28.7 1.65045592705167 94 67 85.7 0 9 290 153 246 VDM92692.1 unnamed protein product, partial [Onchocerca ochengi] diamond 543 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca ochengi
32682442 32682442 PRJNA1068830_P_NODE_58560_length_284_cov_2.085308_g57857_i0 PRJNA1068830 58560 284 2.085308 5.92227472 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92.8 7.22e-22   NR CAJ0604527.1 53992 g57857 i0 60 21.8028169014085 75 30 79.2 0 60 284 8 82 CAJ0604527.1 unnamed protein product [Cylicocyclus nassatus] diamond 6192 93.6 0.991452991452991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;