RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1068830" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1068830 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7835797 7835797 PRJNA1068830_P_NODE_62667_length_274_cov_2.258706_g61964_i0 PRJNA1068830 62667 274 2.258706 6.18885444 root 1 Root_unresolved Root_unresolved 108 1.18e-25   NR KAJ3439017.1 1746091 g61964 i0 51.7 5.81386861313869 89 43 97.4 0 268 2 101 189 KAJ3439017.1 branched-chain-amino-acid aminotransferase [Anaeramoeba flamelloides] diamond 1593 108 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
19309422 19309422 PRJNA1068830_P_NODE_83996_length_245_cov_0.906977_g83293_i0 PRJNA1068830 83996 245 0.906977 2.22209365 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 3.05e-30   NR KAJ4458621.1 342808 g83293 i0 67.1 2.77959183673469 79 26 96.7 0 237 1 2 80 KAJ4458621.1 putative 40S ribosomal protein S16-1 [Paratrimastix pyriformis] diamond 681 114 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;