RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1068513" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1068513 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28614820 28614820 PRJNA1068513_S_NODE_8187_length_316_cov_5.481481_g8141_i0 PRJNA1068513 8187 316 5.481481 17.32147996 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 73.2 7.8e-13   NR MDX1565183.1 2026777 g8141 i0 54.1 1.20569620253165 61 28 57.9 0 18 200 223 283 MDX1565183.1 aldolase/citrate lyase family protein [Phycisphaeraceae bacterium] diamond 381 73.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
29088481 29088481 PRJNA1068513_S_NODE_9428_length_293_cov_1.259091_g9382_i0 PRJNA1068513 9428 293 1.259091 3.68913663 Planctomycetota bacterium 2026780 Bacteria Bacteria 70.1 1.58e-11   NR MFT7557815.1 2026780 g9382 i0 68.2 0.450511945392491 44 14 45.1 0 47 178 437 480 MFT7557815.1 asparaginyl-tRNA synthetase [Planctomycetota bacterium] diamond 132 70.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29846186 29846186 PRJNA1068513_S_NODE_6491_length_358_cov_3.589474_g6445_i0 PRJNA1068513 6491 358 3.589474 12.85031692 Fimbriiglobus sp. 1914235 Bacteria Bacteria 68.2 1.43e-10   NR MCU0702928.1 1914235 g6445 i0 46.7 3.82122905027933 75 40 62.8 0 9 233 306 380 MCU0702928.1 cysteine desulfurase [Fimbriiglobus sp.] diamond 1368 68.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Fimbriiglobus Fimbriiglobus sp.
31006741 31006741 PRJNA1068513_S_NODE_11114_length_266_cov_1.212435_g11068_i0 PRJNA1068513 11114 266 1.212435 3.2250771 Planctomycetota 203682 Bacteria Bacteria 55.1 2.31e-6   NR PHS07368.1 2024826 g11068 i0 63 4.68045112781955 46 17 51.9 0 1 138 1750 1795 PHS07368.1 MAG: hypothetical protein COA78_13480, partial [Blastopirellula sp.] diamond 1245 55.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Blastopirellula Blastopirellula sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;