RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1068513" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 3 ✖

bioproject 1

  • PRJNA1068513 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26846086 26846086 PRJNA1068513_S_NODE_9841_length_286_cov_1.323944_g9795_i0 PRJNA1068513 9841 286 1.323944 3.78647984 Parvovirus dugesia6 3117077 Viruses Viruses 44.7 0.0132   NR DBA49073.1 3117077 g9795 i0 34.3 0.734265734265734 70 45 73.4 1 74 283 300 368 DBA49073.1 MAG TPA_asm: CressRep [Parvovirus dugesia6041] diamond 210 44.7 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus dugesia6041
30857138 30857138 PRJNA1068513_S_NODE_2654_length_520_cov_1.821029_g2610_i0 PRJNA1068513 2654 520 1.821029 9.4693508 Parvovirus dugesia6 3117077 Viruses Viruses 62.8 5.93e-8   NR DBA49069.1 3117077 g2610 i0 25.7 0.986538461538462 171 120 95.8 3 4 501 50 218 DBA49069.1 MAG TPA_asm: VP [Parvovirus dugesia6041] diamond 513 62.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus dugesia6041
31932123 31932123 PRJNA1068513_S_NODE_9617_length_290_cov_0.875576_g9571_i0 PRJNA1068513 9617 290 0.875576 2.5391704 Parvovirus dugesia6 3117077 Viruses Viruses 48.1 7.73e-4   NR DBA49074.1 3117077 g9571 i0 39.7 0.703448275862069 68 41 70.3 0 85 288 148 215 DBA49074.1 MAG TPA_asm: Alt [Parvovirus dugesia6041] diamond 204 48.1 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus dugesia6041

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;