RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1067443" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1067443 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26718728 26718728 PRJNA1067443_P_NODE_3181_length_409_cov_9.041667_g3163_i0 PRJNA1067443 3181 409 9.041667 36.98041803 Balamuthia mandrillaris 66527 Discosea other_Eukaryota 92.8 6e-19   NR AKT93769.1 66527 g3163 i0 46.9 1.78973105134474 113 60 82.9 0 409 71 361 473 AKT93769.1 NADH dehydrogenase subunit 4 [Balamuthia mandrillaris] diamond 732 92.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Balamuthiidae Balamuthia Balamuthia mandrillaris
26750371 26750371 PRJNA1067443_P_NODE_15101_length_256_cov_2.349727_g15083_i0 PRJNA1067443 15101 256 2.349727 6.01530112 Paravannella minima 1443144 Discosea other_Eukaryota 65.1 5.66e-10   NR YP_009557774.1 1443144 g15083 i0 70.2 4.40625 47 13 55.1 1 57 197 212 257 YP_009557774.1 NADH dehydrogenase subunit 4 [Paravannella minima] diamond 1128 65.1 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
27856894 27856894 PRJNA1067443_P_NODE_23785_length_229_cov_2.224359_g23767_i0 PRJNA1067443 23785 229 2.224359 5.09378211 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62 5.06e-9   NR XP_004337277.1 1257118 g23767 i0 42.7 0.982532751091703 75 43 98.3 0 5 229 440 514 XP_004337277.1 DENN (AEX3) domain containing protein [Acanthamoeba castellanii str. Neff] diamond 225 62 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;