RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1067443" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1067443 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28290472 28290472 PRJNA1067443_P_NODE_18026_length_248_cov_1.594286_g18008_i0 PRJNA1067443 18026 248 1.594286 3.95382928 root 1 Root_unresolved Root_unresolved 43.9 0.0159   NR XP_061445943.1 261503 g18008 i0 42.9 1.33064516129032 63 35 76.2 1 223 35 37 98 XP_061445943.1 serine/threonine-protein kinase WNK4 [Rhineura floridana] diamond 330 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Rhineuridae Rhineura Rhineura floridana
32627853 32627853 PRJNA1067443_P_NODE_15300_length_255_cov_5.472527_g15282_i0 PRJNA1067443 15300 255 5.472527 13.95494385 Bos mutus 72004 Chordata Chordata 52.4 1.18e-5   NR XP_070226243.1 72004 g15282 i0 50.9 1.22352941176471 57 23 61.2 1 100 255 15 71 XP_070226243.1 LINE-1 type transposase domain-containing protein 1 [Bos mutus] diamond 312 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;