RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1067443" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 9 ✖

bioproject 1

  • PRJNA1067443 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1456202 1456202 PRJNA1067443_P_NODE_22382_length_241_cov_1.571429_g22364_i0 PRJNA1067443 22382 241 1.571429 3.78714389 Deinococcus radiodurans 1299 Bacteria Bacteria 91.7 2.24e-19   NR WP_034349876.1 1299 g22364 i0 71.6 2.00414937759336 81 16 99.6 3 2 241 523 597 WP_034349876.1 excinuclease ABC subunit UvrA [Deinococcus radiodurans] diamond 483 91.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
14210179 14210179 PRJNA1067443_P_NODE_19452_length_246_cov_0.890173_g19434_i0 PRJNA1067443 19452 246 0.890173 2.18982558 Deinococcus 1298 Bacteria Bacteria 107 1.3500000000000002e-26   NR MDO4264464.1 47478 g19434 i0 83.3 3.59756097560976 60 10 73.2 0 245 66 167 226 MDO4264464.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase [Deinococcus sp.] diamond 885 107 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
27161848 27161848 PRJNA1067443_P_NODE_15842_length_253_cov_1.655556_g15824_i0 PRJNA1067443 15842 253 1.655556 4.18855668 Deinococcus xinjiangensis 457454 Bacteria Bacteria 140 1.2e-36   NR WP_353543144.1 457454 g15824 i0 78.6 1.99209486166008 84 18 99.6 0 253 2 509 592 WP_353543144.1 CRISPR-associated helicase Cas3' [Deinococcus xinjiangensis] diamond 504 140 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
27825508 27825508 PRJNA1067443_P_NODE_9284_length_290_cov_1.341014_g9266_i0 PRJNA1067443 9284 290 1.341014 3.8889406 Deinococcus proteolyticus 55148 Bacteria Bacteria 121 5.73e-31   NR WP_013623081.1 55148 g9266 i0 77.1 1.69655172413793 83 19 85.9 0 38 286 167 249 WP_013623081.1 1-phosphofructokinase [Deinococcus proteolyticus] diamond 492 121 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus proteolyticus
28835736 28835736 PRJNA1067443_P_NODE_18508_length_247_cov_3.856322_g18490_i0 PRJNA1067443 18508 247 3.856322 9.52511534 Deinococcus sp. 12RED42 2745872 Bacteria Bacteria 89.4 1.72e-19   NR WP_230288396.1 2745872 g18490 i0 86.3 1.31174089068826 51 7 61.9 0 153 1 6 56 WP_230288396.1 GNAT family N-acetyltransferase, partial [Deinococcus sp. 12RED42] diamond 324 89.4 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. 12RED42
30004192 30004192 PRJNA1067443_P_NODE_9531_length_288_cov_1.813953_g9513_i0 PRJNA1067443 9531 288 1.813953 5.22418464 Deinococcus sp. 47478 Bacteria Bacteria 157 3.5699999999999995e-47   NR WP_303101259.1 47478 g9513 i0 83.3 2 96 16 100 0 288 1 32 127 WP_303101259.1 type II toxin-antitoxin system VapC family toxin [Deinococcus sp.] diamond 576 157 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
31268001 31268001 PRJNA1067443_P_NODE_12155_length_272_cov_2.175879_g12137_i0 PRJNA1067443 12155 272 2.175879 5.91839088 Deinococcus navajonensis 309884 Bacteria Bacteria 146 4.22e-40   NR WP_380038373.1 309884 g12137 i0 77.8 0.992647058823529 90 20 99.3 0 270 1 211 300 WP_380038373.1 phage terminase large subunit [Deinococcus navajonensis] diamond 270 146 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus navajonensis
32438730 32438730 PRJNA1067443_P_NODE_3059_length_414_cov_4.181818_g3041_i0 PRJNA1067443 3059 414 4.181818 17.31272652 Thermus sp. 275 Bacteria Bacteria 149 1.42e-39   NR WP_370533049.1 275 g3041 i0 87.7 0.528985507246377 73 9 52.9 0 412 194 91 163 WP_370533049.1 FGGY-family carbohydrate kinase [Thermus sp.] diamond 219 149 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.
32816900 32816900 PRJNA1067443_P_NODE_19300_length_246_cov_1.387283_g19282_i0 PRJNA1067443 19300 246 1.387283 3.41271618 Deinococcus lacus 392561 Bacteria Bacteria 93.2 3.66e-20   NR WP_380083922.1 392561 g19282 i0 74.2 0.75609756097561 62 16 75.6 0 190 5 79 140 WP_380083922.1 serine protease [Deinococcus lacus] diamond 186 93.2 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus lacus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;