RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1067370" and tax_phylum = "Orthonectida"

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tax_superkingdom 1

tax_phylum 1

  • Orthonectida · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1067370 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31015031 31015031 PRJNA1067370_P_NODE_31575_length_349_cov_0.985507_g31027_i0 PRJNA1067370 31575 349 0.985507 3.43941943 Intoshia linei 1819745 Orthonectida other_Eukaryota 61.2 4.15e-8   NR OAF69348.1 1819745 g31027 i0 35.5 2.25214899713467 93 58 78.2 2 311 39 789 881 OAF69348.1 hypothetical protein A3Q56_02925 [Intoshia linei] diamond 786 61.2 1 Eukaryota Opisthokonta Metazoa Orthonectida     Rhopaluridae Intoshia Intoshia linei
31615868 31615868 PRJNA1067370_P_NODE_79836_length_251_cov_0.865169_g79287_i0 PRJNA1067370 79836 251 0.865169 2.17157419 Intoshia linei 1819745 Orthonectida other_Eukaryota 57 3.97e-7   NR OAF72048.1 1819745 g79287 i0 44.1 0.705179282868526 59 32 70.5 1 228 52 276 333 OAF72048.1 Transcription elongation factor SPT6 [Intoshia linei] diamond 177 57 1 Eukaryota Opisthokonta Metazoa Orthonectida     Rhopaluridae Intoshia Intoshia linei
31773918 31773918 PRJNA1067370_P_NODE_79497_length_251_cov_0.865169_g78948_i0 PRJNA1067370 79497 251 0.865169 2.17157419 Intoshia linei 1819745 Orthonectida other_Eukaryota 49.3 2.02e-4   NR OAF71785.1 1819745 g78948 i0 37.5 2.74900398406374 80 48 93.2 2 241 8 345 424 OAF71785.1 hypothetical protein A3Q56_00404 [Intoshia linei] diamond 690 49.3 1 Eukaryota Opisthokonta Metazoa Orthonectida     Rhopaluridae Intoshia Intoshia linei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;