RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1066877" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1066877 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27730828 27730828 PRJNA1066877_S_NODE_12144_length_164_cov_0.886957_g12109_i0 PRJNA1066877 12144 164 0.886957 1.45460948 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 42 0.00688   NR CAI9176387.1 3082113 g12109 i0 66.7 0.439024390243902 24 8 43.9 0 55 126 75 98 CAI9176387.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 72 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
31331017 31331017 PRJNA1066877_S_NODE_1416_length_370_cov_1.906542_g1381_i0 PRJNA1066877 1416 370 1.906542 7.0542054 Lynx pardinus 191816 Chordata Chordata 47.4 0.00323   NR VFV37723.1 191816 g1381 i0 58 0.405405405405405 50 21 40.5 0 38 187 4 53 VFV37723.1 Hypothetical predicted protein [Lynx pardinus] diamond 150 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Lynx Lynx pardinus
32871522 32871522 PRJNA1066877_S_NODE_12740_length_162_cov_0.858407_g12705_i0 PRJNA1066877 12740 162 0.858407 1.39061934 Delphinidae 9726 Chordata Chordata 46.2 7.57e-4   NR XP_049562359.1 9733 g12705 i0 52.7 3.05555555555556 55 20 90.7 1 162 16 80 134 XP_049562359.1 protein farnesyltransferase subunit beta isoform X3 [Orcinus orca] diamond 495 46.6 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Orcinus Orcinus orca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;