RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1066877" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1066877 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21857290 21857290 PRJNA1066877_S_NODE_8478_length_188_cov_1.575540_g8443_i0 PRJNA1066877 8478 188 1.57554 2.9620152 Sarcoptiformes 83137 Arthropoda Arthropoda 76.6 5.15e-15   NR KAF7495963.1 52283 g8443 i0 80.4 2.93617021276596 46 9 73.4 0 140 3 33 78 KAF7495963.1 40S ribosomal protein S2 [Sarcoptes scabiei] diamond 552 77 0.994805194805195 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Sarcoptiformes Sarcoptidae Sarcoptes Sarcoptes scabiei
29466763 29466763 PRJNA1066877_S_NODE_12450_length_163_cov_0.894737_g12415_i0 PRJNA1066877 12450 163 0.894737 1.45842131 Dinothrombium tinctorium 1965070 Arthropoda Arthropoda 76.3 1.27e-15   NR RWS07582.1 1965070 g12415 i0 82.5 0.736196319018405 40 7 73.6 0 121 2 19 58 RWS07582.1 RNA-binding protein-like protein, partial [Dinothrombium tinctorium] diamond 120 76.3 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Trombidiformes Trombidiidae Dinothrombium Dinothrombium tinctorium
31331019 31331019 PRJNA1066877_S_NODE_9236_length_182_cov_1.533835_g9201_i0 PRJNA1066877 9236 182 1.533835 2.7915797 Histiostomatidae sp. XFX 2652661 Arthropoda Arthropoda 48.1 2.05e-4   NR QFG71638.1 2652661 g9201 i0 56.3 0.791208791208791 48 21 79.1 0 3 146 433 480 QFG71638.1 NADH dehydrogenase subunit 5 [Histiostomatidae sp. XFX] diamond 144 48.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Sarcoptiformes Histiostomatidae   Histiostomatidae sp. XFX
32216920 32216920 PRJNA1066877_S_NODE_10178_length_175_cov_1.214286_g10143_i0 PRJNA1066877 10178 175 1.214286 2.1250005 Sitodiplosis mosellana 263140 Arthropoda Arthropoda 45.4 0.00163   NR XP_055303338.1 263140 g10143 i0 88.5 0.445714285714286 26 3 44.6 0 3 80 576 601 XP_055303338.1 amyloid protein-binding protein 2 [Sitodiplosis mosellana] diamond 78 45.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Cecidomyiidae Sitodiplosis Sitodiplosis mosellana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;