RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1065838" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1065838 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26678799 26678799 PRJNA1065838_S_NODE_33101_length_167_cov_0.864407_g32999_i0 PRJNA1065838 33101 167 0.864407 1.44355969 Halobacteriales 2235 Archaea Archaea 55.5 4.13e-7   NR WP_157078477.1 1008153 g32999 i0 49 8.02994011976048 51 26 91.6 0 155 3 138 188 WP_157078477.1 DUF7260 family protein [Halalkalicoccus paucihalophilus] diamond 1341 55.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus paucihalophilus
31552727 31552727 PRJNA1065838_S_NODE_33636_length_166_cov_0.888889_g33534_i0 PRJNA1065838 33636 166 0.888889 1.47555574 Haloarcula 2237 Archaea Archaea 98.2 1.32e-22   NR WP_206508225.1 2237 g33534 i0 74.1 0.975903614457831 54 14 97.6 0 164 3 155 208 WP_206508225.1 MULTISPECIES: IS630 family transposase [Haloarcula] diamond 162 98.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula  
31995392 31995392 PRJNA1065838_S_NODE_17438_length_210_cov_0.968944_g17336_i0 PRJNA1065838 17438 210 0.968944 2.0347824 Marine Group III euryarchaeote CG-Bathy1 1889001 Archaea Archaea 59.3 3.35e-8   NR OIR14059.1 1889001 g17336 i0 45.6 1.98571428571429 68 37 97.1 0 205 2 122 189 OIR14059.1 MAG: adenosylhomocysteinase [Marine Group III euryarchaeote CG-Bathy1] diamond 417 59.3 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Candidatus Thermoprofundales     Marine Group III euryarchaeote CG-Bathy1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;