RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1065838" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1065838 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29309160 29309160 PRJNA1065838_S_NODE_32269_length_168_cov_1.033613_g32167_i0 PRJNA1065838 32269 168 1.033613 1.73646984 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 106 1.72e-27   NR MBP9675022.1 2081706 g32167 i0 89.3 1 56 6 100 0 1 168 27 82 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 168 106 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31931958 31931958 PRJNA1065838_S_NODE_36137_length_162_cov_1.265487_g36035_i0 PRJNA1065838 36137 162 1.265487 2.05008894 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 49.7 2.07e-5   NR MBP9675022.1 2081706 g36035 i0 44.9 1.85185185185185 49 27 90.7 0 161 15 78 126 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 300 49.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32785166 32785166 PRJNA1065838_S_NODE_980_length_593_cov_2.213235_g880_i0 PRJNA1065838 980 593 2.213235 13.12448355 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 213 3.98e-67   NR MBP9675022.1 2081706 g880 i0 85.1 0.612141652613828 121 18 61.2 0 35 397 6 126 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 363 213 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;