contig_metadata
4 rows where analysis = "diamond", bioproject = "PRJNA1065838" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28551616 | 28551616 | PRJNA1065838_S_NODE_32327_length_168_cov_0.873950_g32225_i0 | PRJNA1065838 | 32327 | 168 | 0.87395 | 1.468236 | Tautonia plasticadhaerens | 2527974 | Bacteria | Bacteria | 61.2 | 3.1e-9 | NR | QDV35674.1 | 2527974 | g32225 | i0 | 52.5 | 1.05357142857143 | 59 | 23 | 98.2 | 2 | 166 | 2 | 84 | 141 | QDV35674.1 Mrr restriction system protein [Tautonia plasticadhaerens] | diamond | 177 | 61.2 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Tautonia | Tautonia plasticadhaerens | |
| 29940929 | 29940929 | PRJNA1065838_S_NODE_25091_length_188_cov_0.625899_g24989_i0 | PRJNA1065838 | 25091 | 188 | 0.625899 | 1.17669012 | Lentisphaeria bacterium | 2053569 | Bacteria | Bacteria | 42.4 | 0.0249 | NR | MBR1966289.1 | 2053569 | g24989 | i0 | 33.3 | 1.0531914893617 | 66 | 36 | 95.7 | 2 | 7 | 186 | 64 | 127 | MBR1966289.1 family 78 glycoside hydrolase catalytic domain [Lentisphaeria bacterium] | diamond | 198 | 42.4 | 1 | Bacteria | PVC group | Pseudomonadati | Lentisphaerota | Lentisphaeria | Lentisphaeria bacterium | ||||
| 31678877 | 31678877 | PRJNA1065838_S_NODE_33997_length_165_cov_1.758621_g33895_i0 | PRJNA1065838 | 33997 | 165 | 1.758621 | 2.90172465 | Tepidisphaeraceae bacterium | 2876886 | Bacteria | Bacteria | 63.9 | 4.13e-10 | NR | HZN64606.1 | 2876886 | g33895 | i0 | 54.9 | 1.92727272727273 | 51 | 23 | 92.7 | 0 | 1 | 153 | 116 | 166 | HZN64606.1 methyltransferase [Tepidisphaeraceae bacterium] | diamond | 318 | 63.9 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Tepidisphaerales | Tepidisphaeraceae | Tepidisphaeraceae bacterium | ||
| 32438573 | 32438573 | PRJNA1065838_S_NODE_32319_length_168_cov_0.873950_g32217_i0 | PRJNA1065838 | 32319 | 168 | 0.87395 | 1.468236 | Chlamydiota bacterium | 2081524 | Bacteria | Bacteria | 81.6 | 2.65e-16 | NR | NGX45594.1 | 2081524 | g32217 | i0 | 68.5 | 0.964285714285714 | 54 | 17 | 96.4 | 0 | 1 | 162 | 455 | 508 | NGX45594.1 ADP-ribosyl-[dinitrogen reductase] glycohydrolase [Chlamydiota bacterium] | diamond | 162 | 81.6 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;