RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1065838" and tax_clade = "FCB group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1065838 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27003700 27003700 PRJNA1065838_S_NODE_29942_length_173_cov_1.258065_g29840_i0 PRJNA1065838 29942 173 1.258065 2.17645245 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 116 2.4e-30   NR HYS70123.1 2026741 g29840 i0 93 0.988439306358382 57 4 98.8 0 171 1 121 177 HYS70123.1 membrane protein insertase YidC [Gemmatimonadaceae bacterium] diamond 171 116 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27888280 27888280 PRJNA1065838_S_NODE_17785_length_209_cov_0.975000_g17683_i0 PRJNA1065838 17785 209 0.975 2.03775 Flavobacterium rhizophilum 3163296 Bacteria Bacteria 120 1.49e-32   NR WP_408076268.1 3163296 g17683 i0 100 0.904306220095694 63 0 90.4 0 3 191 109 171 WP_408076268.1 hypothetical protein, partial [Flavobacterium rhizophilum] diamond 189 120 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium rhizophilum
28646269 28646269 PRJNA1065838_S_NODE_32387_length_168_cov_0.873950_g32285_i0 PRJNA1065838 32387 168 0.87395 1.468236 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 114 1.17e-27   NR HVL17370.1 2448054 g32285 i0 100 1 56 0 100 0 1 168 477 532 HVL17370.1 TonB-dependent receptor [Gemmatimonadales bacterium] diamond 168 114 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31955296 31955296 PRJNA1065838_S_NODE_24097_length_191_cov_1.098592_g23995_i0 PRJNA1065838 24097 191 1.098592 2.09831072 Pseudomonadati 3379134 Bacteria Bacteria 113 7.659999999999999e-31   NR PAM92647.1 2026304 g23995 i0 100 1.63350785340314 52 0 81.7 0 191 36 59 110 PAM92647.1 hypothetical protein B4N84_22100, partial [Flavobacterium sp. IR1] diamond 312 113 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. IR1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;