RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1065838" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1065838 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27604415 27604415 PRJNA1065838_S_NODE_31624_length_169_cov_1.191667_g31522_i0 PRJNA1065838 31624 169 1.191667 2.01391723 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 79.7 1.28e-15   NR KAJ9446733.1 91374 g31522 i0 64.2 1.88165680473373 53 19 94.1 0 11 169 795 847 KAJ9446733.1 Cation transporter/ATPase [Diplonema papillatum] diamond 318 79.7 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
29656120 29656120 PRJNA1065838_S_NODE_28250_length_178_cov_0.906977_g28148_i0 PRJNA1065838 28250 178 0.906977 1.61441906 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 92 7.98e-22   NR XP_002676701.1 5762 g28148 i0 76.7 1.01123595505618 60 13 99.4 1 178 2 76 135 XP_002676701.1 uncharacterized protein NAEGRDRAFT_67954 [Naegleria gruberi] diamond 180 92 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;