RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1065838" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA1065838 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27983101 27983101 PRJNA1065838_S_NODE_13225_length_225_cov_1.443182_g13123_i0 PRJNA1065838 13225 225 1.443182 3.2471595 Candidatus Levyibacteriota bacterium 2052151 Bacteria Bacteria 69.7 9.53e-12   NR MBP9815248.1 2052151 g13123 i0 57.3 2 75 32 100 0 1 225 780 854 MBP9815248.1 MerR family DNA-binding transcriptional regulator [Candidatus Levyibacteriota bacterium] diamond 450 69.7 1 Bacteria Bacteria candidate phyla   Candidatus Levyibacteriota         Candidatus Levyibacteriota bacterium
29782827 29782827 PRJNA1065838_S_NODE_24991_length_188_cov_1.438849_g24889_i0 PRJNA1065838 24991 188 1.438849 2.70503612 Candidatus Elulimicrobium humile 2802965 Bacteria Bacteria 93.2 3.5399999999999995e-23   NR NBP56117.1 2802965 g24889 i0 87.8 4.65957446808511 49 6 78.2 0 147 1 16 64 NBP56117.1 hypothetical protein [Candidatus Elulimicrobium humile] diamond 876 93.2 1 Bacteria Bacteria candidate phyla   Candidatus Elulimicrobiota Candidatus Elulimicrobia Candidatus Elulimicrobiales Candidatus Elulimicrobiaceae Candidatus Elulimicrobium Candidatus Elulimicrobium humile
31417670 31417670 PRJNA1065838_S_NODE_19976_length_202_cov_1.287582_g19874_i0 PRJNA1065838 19976 202 1.287582 2.60091564 Pseudomonadati 3379134 Bacteria Bacteria 63.2 1.04e-9   NR HXJ86572.1 2838779 g19874 i0 50.8 1.87128712871287 59 29 87.6 0 26 202 63 121 HXJ86572.1 TIR domain-containing protein [Candidatus Binatia bacterium] diamond 378 63.5 0.995275590551181 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
32027045 32027045 PRJNA1065838_S_NODE_7358_length_279_cov_0.947826_g7256_i0 PRJNA1065838 7358 279 0.947826 2.6444345399999998 Candidatus Levyibacteriota bacterium 2052151 Bacteria Bacteria 141 1.39e-36   NR MBP9815248.1 2052151 g7256 i0 84.8 0.989247311827957 92 14 98.9 0 278 3 657 748 MBP9815248.1 MerR family DNA-binding transcriptional regulator [Candidatus Levyibacteriota bacterium] diamond 276 141 1 Bacteria Bacteria candidate phyla   Candidatus Levyibacteriota         Candidatus Levyibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;