RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1063685" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1063685 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27604401 27604401 PRJNA1063685_S_NODE_60004_length_280_cov_2.270531_g59461_i0 PRJNA1063685 60004 280 2.270531 6.3574868 Fibrobacterota bacterium 2052160 Bacteria Bacteria 50.4 1.2e-4   NR MDB5106241.1 2052160 g59461 i0 44.3 0.653571428571429 61 30 65.4 1 268 86 1820 1876 MDB5106241.1 repeat-containing protein [Fibrobacterota bacterium] diamond 183 50.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
30098577 30098577 PRJNA1063685_S_NODE_48912_length_324_cov_2.115538_g48369_i0 PRJNA1063685 48912 324 2.115538 6.85434312 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 71.6 1.77e-13   NR MFP4014453.1 2813024 g48369 i0 42.2 1.67592592592593 90 52 83.3 0 1 270 24 113 MFP4014453.1 phenylpyruvate tautomerase MIF-related protein [Chitinispirillaceae bacterium] diamond 543 71.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;