RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1063685" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1063685 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30541027 30541027 PRJNA1063685_S_NODE_9733_length_633_cov_3.189286_g9221_i0 PRJNA1063685 9733 633 3.189286 20.18818038 Arcobacter sp. 1872629 Bacteria Bacteria 103 6.88e-22   NR WP_287792238.1 1872629 g9221 i0 48.5 0.919431279620853 99 51 46.9 0 30 326 402 500 WP_287792238.1 Eco57I restriction-modification methylase domain-containing protein [Arcobacter sp.] diamond 582 103 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp.
30667430 30667430 PRJNA1063685_S_NODE_69733_length_251_cov_0.865169_g69190_i0 PRJNA1063685 69733 251 0.865169 2.17157419 Arcobacteraceae bacterium 2808971 Bacteria Bacteria 160 1.1399999999999996e-43   NR MDX9795282.1 2808971 g69190 i0 97.6 0.99203187250996006 83 2 99.2 0 249 1 250 332 MDX9795282.1 phenylalanine--tRNA ligase subunit beta [Arcobacteraceae bacterium] diamond 249 160 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae   Arcobacteraceae bacterium
32501832 32501832 PRJNA1063685_S_NODE_21379_length_496_cov_28.983452_g20840_i0 PRJNA1063685 21379 496 28.983452 143.75792192 Campylobacter sp. 2 205 Bacteria Bacteria 108 1.06e-26   NR WP_214120692.1 2836735 g20840 i0 65.2 0.556451612903226 92 32 55.6 0 56 331 17 108 WP_214120692.1 hypothetical protein, partial [Campylobacter sp. 2018MI01] diamond 276 108 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 2018MI01

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;