RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1063685" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1063685 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10382653 10382653 PRJNA1063685_S_NODE_1549_length_980_cov_17.334068_g1258_i0 PRJNA1063685 1549 980 17.334068 169.8738664 Methanosarcinales archaeon 2250255 Archaea Archaea 280 3.419999999999999e-89   NR RYE82365.1 2250255 g1258 i0 47.2 0.91530612244898 299 155 90.9 2 935 45 24 321 RYE82365.1 MAG: fatty acid desaturase, partial [Methanosarcinales archaeon] diamond 897 280 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
26814052 26814052 PRJNA1063685_S_NODE_9741_length_633_cov_1.787500_g9229_i0 PRJNA1063685 9741 633 1.7875 11.314875 Halorussus halophilus 2650975 Archaea Archaea 64.3 8.47e-9   NR WP_158056415.1 2650975 g9229 i0 36.4 1.35545023696682 140 68 57.8 7 68 433 36 172 WP_158056415.1 CHRD domain-containing protein [Halorussus halophilus] diamond 858 64.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Halorussus Halorussus halophilus
26972128 26972128 PRJNA1063685_S_NODE_8162_length_660_cov_3.415673_g7662_i0 PRJNA1063685 8162 660 3.415673 22.5434418 Halosimplex aquaticum 3026162 Archaea Archaea 112 1.66e-24   NR WP_274325319.1 3026162 g7662 i0 30.3 1.91818181818182 211 136 92.7 2 648 37 281 487 WP_274325319.1 PAS domain-containing sensor histidine kinase [Halosimplex aquaticum] diamond 1266 112 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex aquaticum
29656095 29656095 PRJNA1063685_S_NODE_35230_length_395_cov_2.537267_g34687_i0 PRJNA1063685 35230 395 2.537267 10.02220465 Candidatus Methanoperedens sp. 2032688 Archaea Archaea 64.3 3.56e-10   NR MCZ7358185.1 2032688 g34687 i0 34 3.91139240506329 103 66 78.2 1 7 315 17 117 MCZ7358185.1 SRPBCC family protein [Candidatus Methanoperedens sp.] diamond 1545 64.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.
30161661 30161661 PRJNA1063685_S_NODE_33692_length_404_cov_5.057402_g33150_i0 PRJNA1063685 33692 404 5.057402 20.43190408 Candidatus Methanogaster sp. ANME-2c ERB4 2759911 Archaea Archaea 96.3 2.62e-20   NR AAU82580.1 2759911 g33150 i0 39.1 3.8168316831683202 138 73 98.8 5 402 4 191 322 AAU82580.1 hypothetical protein GZ18F2_10 [Candidatus Methanogaster sp. ANME-2c ERB4] diamond 1542 96.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanogasteraceae Candidatus Methanogaster Candidatus Methanogaster sp. ANME-2c ERB4
30257055 30257055 PRJNA1063685_S_NODE_51212_length_314_cov_1.278008_g50669_i0 PRJNA1063685 51212 314 1.278008 4.01294512 Methanofollis sp. 2052835 Archaea Archaea 44.7 0.0187   NR MDK2974386.1 2052835 g50669 i0 34.8 0.85031847133758 89 53 82.2 3 5 262 904 990 MDK2974386.1 hypothetical protein [Methanofollis sp.] diamond 267 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis sp.
30446435 30446435 PRJNA1063685_S_NODE_4893_length_735_cov_24.883686_g4463_i0 PRJNA1063685 4893 735 24.883686 182.8950921 Thermoplasmata archaeon 1906666 Archaea Archaea 58.5 4.63e-6   NR MCI4343664.1 1906666 g4463 i0 28.3 0.763265306122449 187 109 68.2 6 718 218 68 249 MCI4343664.1 MBL fold metallo-hydrolase [Thermoplasmata archaeon] diamond 561 58.5 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;