RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1061474" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1061474 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5281358 5281358 PRJNA1061474_P_NODE_39365_length_283_cov_1.428571_g39119_i0 PRJNA1061474 39365 283 1.428571 4.04285593 Chytriomycetaceae 1352827 Fungi Fungi 134 4.7e-34   NR KAI9343993.1 110081 g39119 i0 67 3.98586572438163 94 31 99.6 0 1 282 131 224 KAI9343993.1 carbamoyl-phosphate synthase L chain, ATP binding domain-containing protein [Obelidium mucronatum] diamond 1128 134 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Obelidium Obelidium mucronatum
27161627 27161627 PRJNA1061474_P_NODE_36242_length_300_cov_1.356828_g35996_i0 PRJNA1061474 36242 300 1.356828 4.070484 Nowakowskiella sp. JEL 2012159 Fungi Fungi 67 2.21e-10   NR KAJ3121537.1 2732418 g35996 i0 41.8 0.79 79 42 75 1 66 290 471 549 KAJ3121537.1 hypothetical protein HK098_003602 [Nowakowskiella sp. JEL0407] diamond 237 67 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JEL0407
27572600 27572600 PRJNA1061474_P_NODE_53044_length_245_cov_0.895349_g52798_i0 PRJNA1061474 53044 245 0.895349 2.19360505 Zopfochytrium polystomum 2211651 Fungi Fungi 87.4 1.33e-18   NR KAI9364969.1 2211651 g52798 i0 61.8 1.70204081632653 68 26 83.3 0 42 245 4 71 KAI9364969.1 nucleoside phosphorylase domain-containing protein [Zopfochytrium polystomum] diamond 417 87.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Zopfochytrium Zopfochytrium polystomum
27951555 27951555 PRJNA1061474_P_NODE_15945_length_506_cov_0.889145_g15699_i0 PRJNA1061474 15945 506 0.889145 4.4990737 Globomyces sp. JEL 2786946 Fungi Fungi 94 1.77e-20   NR KAJ2996896.1 2786946 g15699 i0 37.2 4.40513833992095 145 87 85.4 2 1 432 45 186 KAJ2996896.1 hypothetical protein HDV02_006071 [Globomyces sp. JEL0801] diamond 2229 94 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Globomycetaceae Globomyces Globomyces sp. JEL0801

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;