RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1059246" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1059246 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15480064 15480064 PRJNA1059246_P_NODE_53693_length_278_cov_1.126829_g53067_i0 PRJNA1059246 53693 278 1.126829 3.13258462 Amoeba proteus 5775 Tubulinea other_Eukaryota 168 1.53e-48   NR AAP88974.1 5775 g53067 i0 82.6 0.992805755395683 92 16 99.3 0 3 278 36 127 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 276 168 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31164358 31164358 PRJNA1059246_P_NODE_40455_length_334_cov_1.873563_g39829_i0 PRJNA1059246 40455 334 1.873563 6.25770042 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 149 1.4099999999999996e-43   NR AFX73066.1 5778 g39829 i0 69.4 22.9311377245509 111 34 99.7 0 334 2 29 139 AFX73066.1 14-3-3 protein, partial [Vermamoeba vermiformis] diamond 7659 149 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;