RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1059246" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1059246 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28962054 28962054 PRJNA1059246_P_NODE_64728_length_248_cov_1.262857_g64102_i0 PRJNA1059246 64728 248 1.262857 3.13188536 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 55.5 1.16e-6   NR AAQ82649.1 1144522 g64102 i0 59.1 2.20161290322581 44 18 53.2 0 110 241 214 257 AAQ82649.1 cysteine protease [Tritrichomonas foetus] diamond 546 55.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31512739 31512739 PRJNA1059246_P_NODE_71216_length_242_cov_0.911243_g70590_i0 PRJNA1059246 71216 242 0.911243 2.20520806 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 68.2 3.47e-11   NR XP_067771055.1 135588 g70590 i0 38.8 5.9504132231405 80 48 99.2 1 241 2 250 328 XP_067771055.1 NAD-dependent epimerase/dehydratase family protein [Histomonas meleagridis] diamond 1440 68.6 0.994169096209913 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31710510 31710510 PRJNA1059246_P_NODE_34297_length_369_cov_2.233108_g33671_i0 PRJNA1059246 34297 369 2.233108 8.24016852 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 109 7.43e-25   NR XP_001313063.1 412133 g33671 i0 46.1 5.43089430894309 128 63 99.2 2 2 367 892 1019 XP_001313063.1 glycogen debranching enzyme family [Trichomonas vaginalis G3] diamond 2004 109 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;