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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA1054617" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1054617 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26623710 26623710 PRJNA1054617_S_NODE_4161_length_262_cov_1.260274_g4073_i0 PRJNA1054617 4161 262 1.260274 3.30191788 Petaurus breviceps papuanus 3040969 Chordata Chordata 53.1 1.04e-5   NR XP_068961427.1 3040969 g4073 i0 46.3 1.23664122137405 54 29 61.8 0 208 47 776 829 XP_068961427.1 centromere protein C isoform X8 [Petaurus breviceps papuanus] diamond 324 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Petauridae Petaurus Petaurus breviceps
27129729 27129729 PRJNA1054617_S_NODE_13482_length_161_cov_3.694915_g13394_i0 PRJNA1054617 13482 161 3.694915 5.94881315 Ranitomeya imitator 111125 Chordata Chordata 41.2 0.0437   NR CAJ0961913.1 111125 g13394 i0 58.1 2.31055900621118 31 13 57.8 0 161 69 783 813 CAJ0961913.1 unnamed protein product [Ranitomeya imitator] diamond 372 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
27446413 27446413 PRJNA1054617_S_NODE_10083_length_183_cov_0.985714_g9995_i0 PRJNA1054617 10083 183 0.985714 1.80385662 Bos mutus 72004 Chordata Chordata 52.4 1.8e-6   NR MXQ86104.1 72004 g9995 i0 90.9 0.360655737704918 22 2 36.1 0 68 3 98 119 MXQ86104.1 hypothetical protein [Bos mutus] diamond 66 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
27477702 27477702 PRJNA1054617_S_NODE_8623_length_195_cov_1.210526_g8535_i0 PRJNA1054617 8623 195 1.210526 2.3605257 Rousettus aegyptiacus 9407 Chordata Chordata 64.3 4.94e-10   NR XP_036086947.1 9407 g8535 i0 67.4 0.707692307692308 46 15 70.8 0 141 4 88 133 XP_036086947.1 uncharacterized protein LOC118610799 [Rousettus aegyptiacus] diamond 138 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
28614436 28614436 PRJNA1054617_S_NODE_11507_length_173_cov_1.061538_g11419_i0 PRJNA1054617 11507 173 1.061538 1.83646074 Varanus komodoensis 61221 Chordata Chordata 55.1 2.5e-7   NR KAF7248239.1 61221 g11419 i0 77.8 0.936416184971098 27 6 46.8 0 4 84 1 27 KAF7248239.1 Syntaxin-18 [Varanus komodoensis] diamond 162 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
28803614 28803614 PRJNA1054617_S_NODE_13188_length_163_cov_1.150000_g13100_i0 PRJNA1054617 13188 163 1.15 1.8745 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 40.8 0.0294   NR CAI9172259.1 3082113 g13100 i0 54.1 0.680981595092024 37 17 68.1 0 51 161 93 129 CAI9172259.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 111 40.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
29719222 29719222 PRJNA1054617_S_NODE_6630_length_217_cov_1.488506_g6542_i0 PRJNA1054617 6630 217 1.488506 3.23005802 Chiroxiphia lanceolata 296741 Chordata Chordata 43.5 0.0139   NR XP_032563442.1 296741 g6542 i0 34.9 1.72811059907834 63 31 81.6 2 9 185 135 191 XP_032563442.1 TNF receptor-associated factor 4 isoform X1 [Chiroxiphia lanceolata] diamond 375 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Pipridae Chiroxiphia Chiroxiphia lanceolata
30635472 30635472 PRJNA1054617_S_NODE_15113_length_154_cov_2.378378_g15025_i0 PRJNA1054617 15113 154 2.378378 3.66270212 Eschrichtius robustus 9764 Chordata Chordata 45.4 1.51e-4   NR KAJ8794285.1 9764 g15025 i0 77.3 0.798701298701299 22 5 42.9 0 66 1 30 51 KAJ8794285.1 hypothetical protein J1605_003242 [Eschrichtius robustus] diamond 123 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
31299225 31299225 PRJNA1054617_S_NODE_9775_length_185_cov_1.471831_g9687_i0 PRJNA1054617 9775 185 1.471831 2.72288735 Myxine glutinosa 7769 Chordata Chordata 51.2 1.72e-5   NR XP_067977669.1 7769 g9687 i0 65.9 1.37837837837838 41 12 63.2 1 28 144 281 321 XP_067977669.1 ubiquitin carboxyl-terminal hydrolase 42-like [Myxine glutinosa] diamond 255 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
31678685 31678685 PRJNA1054617_S_NODE_5517_length_233_cov_3.415789_g5429_i0 PRJNA1054617 5517 233 3.415789 7.95878837 Polypterus senegalus 55291 Chordata Chordata 43.9 0.0113   NR XP_039600642.1 55291 g5429 i0 61.3 1.17167381974249 31 12 39.9 0 231 139 202 232 XP_039600642.1 E3 SUMO-protein ligase ZBED1-like [Polypterus senegalus] diamond 273 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31702305 31702305 PRJNA1054617_S_NODE_9417_length_188_cov_1.268966_g9329_i0 PRJNA1054617 9417 188 1.268966 2.38565608 Mammalia 40674 Chordata Chordata 43.5 0.00699   NR KAF6366527.1 59472 g9329 i0 64 10.4042553191489 25 9 39.9 0 130 56 36 60 KAF6366527.1 hypothetical protein mPipKuh1_009929 [Pipistrellus kuhlii] diamond 1956 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Pipistrellus Pipistrellus kuhlii
31805282 31805282 PRJNA1054617_S_NODE_6277_length_222_cov_1.027933_g6189_i0 PRJNA1054617 6277 222 1.027933 2.28201126 Eschrichtius robustus 9764 Chordata Chordata 48.9 1.24e-4   NR XP_068401777.1 9764 g6189 i0 71.4 0.472972972972973 35 10 47.3 0 146 42 169 203 XP_068401777.1 proline-rich protein HaeIII subfamily 1-like [Eschrichtius robustus] diamond 105 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
32153395 32153395 PRJNA1054617_S_NODE_4938_length_244_cov_1.825871_g4850_i0 PRJNA1054617 4938 244 1.825871 4.45512524 Myxine glutinosa 7769 Chordata Chordata 93.6 4.96e-20   NR XP_067965260.1 7769 g4850 i0 66.7 0.885245901639344 72 12 73.8 1 238 59 227 298 XP_067965260.1 protein FAM83B-like [Myxine glutinosa] diamond 216 93.6 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
32406560 32406560 PRJNA1054617_S_NODE_13999_length_159_cov_1.586207_g13911_i0 PRJNA1054617 13999 159 1.586207 2.52206913 Manis javanica 9974 Chordata Chordata 46.2 7.32e-4   NR KAI5934349.1 9974 g13911 i0 63.3 2.15094339622642 30 11 56.6 0 67 156 479 508 KAI5934349.1 LINE-1 retrotransposable element ORF2 protein [Manis javanica] diamond 342 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
32816537 32816537 PRJNA1054617_S_NODE_4300_length_258_cov_2.153488_g4212_i0 PRJNA1054617 4300 258 2.153488 5.55599904 Kogia breviceps 27615 Chordata Chordata 53.5 6.74e-6   NR XP_066874417.1 27615 g4212 i0 68.8 1.31395348837209 32 10 37.2 0 156 61 17 48 XP_066874417.1 branched-chain-amino-acid aminotransferase, mitochondrial isoform X3 [Kogia breviceps] diamond 339 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Kogia Kogia breviceps
32879508 32879508 PRJNA1054617_S_NODE_11360_length_174_cov_1.038168_g11272_i0 PRJNA1054617 11360 174 1.038168 1.80641232 Crocuta crocuta 9678 Chordata Chordata 53.5 1.64e-6   NR KAF0871064.1 9678 g11272 i0 70 0.689655172413793 40 12 69 0 131 12 47 86 KAF0871064.1 LORF2 protein, partial [Crocuta crocuta] diamond 120 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;