RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1054617" and tax_kingdom = "Fungi"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1054617 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28480025 28480025 PRJNA1054617_S_NODE_13606_length_161_cov_1.169492_g13518_i0 PRJNA1054617 13606 161 1.169492 1.88288212 Eukaryota 2759 Fungi Fungi 84 6.34e-18   NR KAF7723836.1 679940 g13518 i0 70.6 2.90683229813665 51 15 95 0 8 160 171 221 KAF7723836.1 40S ribosomal protein [Apophysomyces ossiformis] diamond 468 84.3 0.99644128113879 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Apophysomyces Apophysomyces ossiformis
29435039 29435039 PRJNA1054617_S_NODE_4790_length_247_cov_1.578431_g4702_i0 PRJNA1054617 4790 247 1.578431 3.89872457 Acrodontium crateriforme 150365 Fungi Fungi 103 1.07e-24   NR WPG99376.1 150365 g4702 i0 91.1 0.680161943319838 56 5 68 0 2 169 250 305 WPG99376.1 Hypothetical protein R9X50_00219000 [Acrodontium crateriforme] diamond 168 103 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Mycosphaerellales Teratosphaeriaceae Acrodontium Acrodontium crateriforme

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;