RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1054617" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA1054617 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27035286 27035286 PRJNA1054617_S_NODE_11482_length_173_cov_1.415385_g11394_i0 PRJNA1054617 11482 173 1.415385 2.44861605 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 65.9 1.01e-10   NR KAJ1441779.1 483371 g11394 i0 59.3 0.936416184971098 54 22 93.6 0 167 6 296 349 KAJ1441779.1 hypothetical protein B484DRAFT_442572 [Ochromonadaceae sp. CCMP2298] diamond 162 65.9 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
27216596 27216596 PRJNA1054617_S_NODE_15662_length_152_cov_1.266055_g15574_i0 PRJNA1054617 15662 152 1.266055 1.9244036 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 47.8 1.82e-4   NR YP_004841738.1 5932 g15574 i0 69.2 4.04605263157895 26 8 51.3 0 70 147 107 132 YP_004841738.1 cytochrome c oxidase subunit 2 [Ichthyophthirius multifiliis] diamond 615 48.1 0.993762993762994 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
30312087 30312087 PRJNA1054617_S_NODE_15792_length_151_cov_2.981481_g15704_i0 PRJNA1054617 15792 151 2.981481 4.50203631 root 1 Root_unresolved Root_unresolved 70.9 1.22e-12   NR KAJ1396262.1 483371 g15704 i0 67.3 1.94701986754967 49 16 97.4 0 3 149 406 454 KAJ1396262.1 NADH dehydrogenase subunit 4 [Ochromonadaceae sp. CCMP2298] diamond 294 70.9 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;