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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1050291" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1050291 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10379213 10379213 PRJNA1050291_P_NODE_15909_length_275_cov_1.207921_g15018_i0 PRJNA1050291 15909 275 1.207921 3.32178275 Emticicia sp. BO119 2757768 Bacteria Bacteria 166 3.21e-50   NR WP_181843672.1 2757768 g15018 i0 92.7 0.894545454545455 82 6 89.5 0 248 3 1 82 WP_181843672.1 dihydrofolate reductase family protein [Emticicia sp. BO119] diamond 246 166 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Emticicia Emticicia sp. BO119
15038746 15038746 PRJNA1050291_P_NODE_3012_length_1233_cov_4.907759_g2170_i0 PRJNA1050291 3012 1233 4.907759 60.51266847 root 1 Root_unresolved Root_unresolved 575 1.0899999999999998e-202   NR WP_027000370.1 997 g2170 i0 71.2 48.0389294403893 393 112 95.6 1 1228 50 15 406 WP_027000370.1 ornithine--oxo-acid transaminase [Eisenibacter elegans] diamond 59232 580 0.991379310344828 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Microscillaceae Eisenibacter Eisenibacter elegans
27319887 27319887 PRJNA1050291_P_NODE_17543_length_258_cov_1.637838_g16652_i0 PRJNA1050291 17543 258 1.637838 4.22562204 Cytophagaceae bacterium 2026729 Bacteria Bacteria 110 2.4799999999999998e-28   NR RYF44830.1 2026729 g16652 i0 67.1 0.988372093023256 85 28 98.8 0 3 257 14 98 RYF44830.1 MAG: methyl-accepting chemotaxis protein, partial [Cytophagaceae bacterium] diamond 255 110 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae   Cytophagaceae bacterium
27319889 27319889 PRJNA1050291_P_NODE_20863_length_243_cov_0.917647_g19972_i0 PRJNA1050291 20863 243 0.917647 2.22988221 Saprospiraceae bacterium 2202734 Bacteria Bacteria 78.2 1.23e-14   NR HMQ50214.1 2202734 g19972 i0 87 1.14814814814815 46 6 56.8 0 241 104 246 291 HMQ50214.1 SusC/RagA family TonB-linked outer membrane protein [Saprospiraceae bacterium] diamond 279 78.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospiraceae   Saprospiraceae bacterium
28195653 28195653 PRJNA1050291_P_NODE_4306_length_801_cov_2.627747_g3425_i0 PRJNA1050291 4306 801 2.627747 21.04825347 Pseudomonadati 3379134 Bacteria Bacteria 84.3 7.75e-16   NR RYF44830.1 2026729 g3425 i0 60.3 0.546816479400749 73 29 27.3 0 219 1 1 73 RYF44830.1 MAG: methyl-accepting chemotaxis protein, partial [Cytophagaceae bacterium] diamond 438 84.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae   Cytophagaceae bacterium
29592779 29592779 PRJNA1050291_P_NODE_18850_length_250_cov_0.881356_g17959_i0 PRJNA1050291 18850 250 0.881356 2.20339 uncultured Porphyromonas sp. 159274 Bacteria Bacteria 68.6 3.34e-11   NR WP_297129322.1 159274 g17959 i0 45.1 0.984 82 45 98.4 0 250 5 5 86 WP_297129322.1 leucine-rich repeat domain-containing protein [uncultured Porphyromonas sp.] diamond 246 68.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas uncultured Porphyromonas sp.
31109418 31109418 PRJNA1050291_P_NODE_10515_length_370_cov_2.902357_g9624_i0 PRJNA1050291 10515 370 2.902357 10.7387209 Chitinophaga skermanii 331697 Bacteria Bacteria 45.4 0.0168   NR WP_111600250.1 331697 g9624 i0 29.9 0.867567567567568 107 70 85.1 2 53 367 27 130 WP_111600250.1 tetratricopeptide repeat protein [Chitinophaga skermanii] diamond 321 45.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga skermanii
31203906 31203906 PRJNA1050291_P_NODE_7095_length_513_cov_1.595455_g6204_i0 PRJNA1050291 7095 513 1.595455 8.18468415 Bacteroidota bacterium 1898104 Bacteria Bacteria 67.4 1.69e-9   NR MBS1536928.1 1898104 g6204 i0 61.1 0.315789473684211 54 21 31.6 0 255 94 710 763 MBS1536928.1 hypothetical protein [Bacteroidota bacterium] diamond 162 67.4 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
31892102 31892102 PRJNA1050291_P_NODE_18857_length_250_cov_0.881356_g17966_i0 PRJNA1050291 18857 250 0.881356 2.20339 Mucilaginibacter 423349 Bacteria Bacteria 110 2.12e-28   NR MDB5134478.1 1882438 g17966 i0 88.7 1.488 62 7 74.4 0 248 63 135 196 MDB5134478.1 LemA family protein [Mucilaginibacter sp.] diamond 372 110 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;