RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1050291" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1050291 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28361690 28361690 PRJNA1050291_P_NODE_15346_length_281_cov_1.500000_g14455_i0 PRJNA1050291 15346 281 1.5 4.215 Armatimonadota bacterium 2033014 Bacteria Bacteria 48.5 5.21e-4   NR MCS7192519.1 2033014 g14455 i0 41.3 1.83629893238434 92 45 95 4 276 10 184 269 MCS7192519.1 pilus assembly protein TadG-related protein [Armatimonadota bacterium] diamond 516 48.5 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28425067 28425067 PRJNA1050291_P_NODE_11466_length_347_cov_1.452555_g10575_i0 PRJNA1050291 11466 347 1.452555 5.04036585 Armatimonadota bacterium 2033014 Bacteria Bacteria 146 1.58e-41   NR MEI7986448.1 2033014 g10575 i0 56.5 0.994236311239193 115 50 99.4 0 1 345 26 140 MEI7986448.1 class I SAM-dependent methyltransferase [Armatimonadota bacterium] diamond 345 146 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30856768 30856768 PRJNA1050291_P_NODE_7694_length_478_cov_1.414815_g6803_i0 PRJNA1050291 7694 478 1.414815 6.7628157 Armatimonadota bacterium 2033014 Bacteria Bacteria 104 1.08e-22   NR MCX6359800.1 2033014 g6803 i0 30.7 1.91422594142259 150 103 94.1 1 1 450 101 249 MCX6359800.1 alpha/beta fold hydrolase [Armatimonadota bacterium] diamond 915 104 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;