RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1050291" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1050291 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17588807 17588807 PRJNA1050291_P_NODE_13374_length_309_cov_2.245763_g12483_i0 PRJNA1050291 13374 309 2.245763 6.93940767 Candidatus Sulfotelmatobacter sp. 2771375 Bacteria Bacteria 196 9.419999999999998e-56   NR HUA51406.1 2771375 g12483 i0 96.1 4.95145631067961 102 4 99 0 307 2 772 873 HUA51406.1 Tn3 family transposase [Candidatus Sulfotelmatobacter sp.] diamond 1530 196 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Candidatus Korobacteraceae Candidatus Sulfotelmatobacter Candidatus Sulfotelmatobacter sp.
26687005 26687005 PRJNA1050291_P_NODE_20281_length_245_cov_0.906977_g19390_i0 PRJNA1050291 20281 245 0.906977 2.22209365 Acidobacteriota bacterium 1978231 Bacteria Bacteria 160 3.88e-48   NR HCG36921.1 1978231 g19390 i0 98.8 0.991836734693878 81 1 99.2 0 2 244 43 123 HCG36921.1 hypothetical protein [Acidobacteriota bacterium] diamond 243 160 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27699098 27699098 PRJNA1050291_P_NODE_9604_length_399_cov_1.233129_g8713_i0 PRJNA1050291 9604 399 1.233129 4.92018471 Terriglobia bacterium 2081523 Bacteria Bacteria 100 9.84e-23   NR MBZ5619883.1 2081523 g8713 i0 38.9 0.984962406015038 131 74 98.5 1 3 395 133 257 MBZ5619883.1 hypothetical protein [Terriglobia bacterium] diamond 393 100 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
30288478 30288478 PRJNA1050291_P_NODE_9752_length_394_cov_2.046729_g8861_i0 PRJNA1050291 9752 394 2.046729 8.06411226 Terriglobales bacterium 2282142 Bacteria Bacteria 177 1.6999999999999998e-49   NR MFB3918015.1 2282142 g8861 i0 64.1 2.9238578680203 128 46 97.5 0 6 389 382 509 MFB3918015.1 class I SAM-dependent methyltransferase [Terriglobales bacterium] diamond 1152 177 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
30762109 30762109 PRJNA1050291_P_NODE_22774_length_203_cov_4.200000_g21883_i0 PRJNA1050291 22774 203 4.2 8.526 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 43.1 0.0161   NR MFN0171375.1 2212468 g21883 i0 36.4 0.812807881773399 55 33 81.3 1 200 36 403 455 MFN0171375.1 tetratricopeptide repeat protein [Bryobacteraceae bacterium] diamond 165 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;