RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1050291" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1050291 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27098488 27098488 PRJNA1050291_P_NODE_8862_length_425_cov_2.849432_g7971_i0 PRJNA1050291 8862 425 2.849432 12.110086 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 55.1 1.13e-5   NR DBA00029.1 4803 g7971 i0 34.8 1.09411764705882 112 72 78.4 1 8 340 246 357 DBA00029.1 TPA: hypothetical protein N0F65_002032 [Lagenidium giganteum] diamond 465 55.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
30351842 30351842 PRJNA1050291_P_NODE_5692_length_621_cov_2.582117_g4802_i0 PRJNA1050291 5692 621 2.582117 16.03494657 Babesia microti strain RI 1133968 SAR_Eukaryotes SAR_Eukaryotes 68.2 1.82e-9   NR XP_012647821.1 1133968 g4802 i0 37.1 0.468599033816425 97 55 45.4 2 269 550 81 174 XP_012647821.1 Mitochondrial ribosomal death-associated protein 3 [Babesia microti strain RI] diamond 291 68.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti
32374963 32374963 PRJNA1050291_P_NODE_20139_length_245_cov_1.732558_g19248_i0 PRJNA1050291 20139 245 1.732558 4.2447671 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 121 3.73e-33   NR CAB9517348.1 568900 g19248 i0 77.2 0.96734693877551 79 18 96.7 0 9 245 68 146 CAB9517348.1 expressed unknown protein [Seminavis robusta] diamond 237 121 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;