RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1047749" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047749 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27383091 27383091 PRJNA1047749_P_NODE_48743_length_216_cov_4.629371_g48476_i0 PRJNA1047749 48743 216 4.629371 9.99944136 Thermus scotoductus 37636 Bacteria Bacteria 129 2.48e-35   NR WP_172960046.1 37636 g48476 i0 88.9 1 72 8 100 0 1 216 6 77 WP_172960046.1 hypothetical protein [Thermus scotoductus] diamond 216 129 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
28014622 28014622 PRJNA1047749_P_NODE_16705_length_312_cov_5.711297_g16438_i0 PRJNA1047749 16705 312 5.711297 17.81924664 Thermus scotoductus 37636 Bacteria Bacteria 101 1.27e-25   NR WP_126170660.1 37636 g16438 i0 94 0.480769230769231 50 3 48.1 0 311 162 42 91 WP_126170660.1 type II toxin-antitoxin system prevent-host-death family antitoxin [Thermus scotoductus] diamond 150 101 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
28835374 28835374 PRJNA1047749_P_NODE_46448_length_229_cov_3.916667_g46181_i0 PRJNA1047749 46448 229 3.916667 8.96916743 Thermus brevis 2862456 Bacteria Bacteria 137 1.24e-37   NR WP_219759340.1 2862456 g46181 i0 95.7 0.91703056768559 70 3 91.7 0 5 214 41 110 WP_219759340.1 CRISPR-associated endonuclease Cas1 [Thermus brevis] diamond 210 137 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brevis
29972086 29972086 PRJNA1047749_P_NODE_24491_length_301_cov_3.254386_g24224_i0 PRJNA1047749 24491 301 3.254386 9.79570186 Thermus brevis 2862456 Bacteria Bacteria 86.3 2.76e-17   NR WP_219759872.1 2862456 g24224 i0 79.2 0.478405315614618 48 10 47.8 0 150 293 209 256 WP_219759872.1 flippase [Thermus brevis] diamond 144 86.3 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brevis
30035380 30035380 PRJNA1047749_P_NODE_37531_length_257_cov_4.619565_g37264_i0 PRJNA1047749 37531 257 4.619565 11.87228205 Thermus sediminis 1761908 Bacteria Bacteria 64.7 2.58e-10   NR WP_117236584.1 1761908 g37264 i0 66.7 0.490272373540856 42 14 49 0 131 256 1 42 WP_117236584.1 MerR family transcriptional regulator [Thermus sediminis] diamond 126 64.7 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sediminis
31267596 31267596 PRJNA1047749_P_NODE_22755_length_302_cov_3.087336_g22488_i0 PRJNA1047749 22755 302 3.087336 9.32375472 Thermus caldifontis 1930763 Bacteria Bacteria 71.2 7.35e-12   NR WP_114313186.1 1930763 g22488 i0 69.4 0.486754966887417 49 13 48.7 2 151 5 512 558 WP_114313186.1 carboxypeptidase regulatory-like domain-containing protein [Thermus caldifontis] diamond 147 71.2 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus caldifontis
31931707 31931707 PRJNA1047749_P_NODE_20597_length_312_cov_2.577406_g20330_i0 PRJNA1047749 20597 312 2.577406 8.04150672 Thermus sp. 275 Bacteria Bacteria 93.6 1.5300000000000002e-21   NR MEN2981687.1 275 g20330 i0 90 0.480769230769231 50 5 48.1 0 312 163 67 116 MEN2981687.1 hypothetical protein [Thermus sp.] diamond 150 93.6 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.
32058353 32058353 PRJNA1047749_P_NODE_23098_length_301_cov_7.105263_g22831_i0 PRJNA1047749 23098 301 7.105263 21.38684163 Meiothermus sp. 1955249 Bacteria Bacteria 84 1.16e-16   NR MER3490547.1 1955249 g22831 i0 93.3 0.448504983388704 45 3 44.9 0 285 151 252 296 MER3490547.1 ribose ABC transporter permease [Meiothermus sp.] diamond 135 84 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;