RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1047749" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047749 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27351602 27351602 PRJNA1047749_P_NODE_13723_length_335_cov_1.606870_g13459_i0 PRJNA1047749 13723 335 1.60687 5.3830145 Campylobacterota bacterium 2026809 Bacteria Bacteria 87.8 7.69e-19   NR RLA68517.1 2026809 g13459 i0 44.7 1.64776119402985 94 50 82.4 2 308 33 2 95 RLA68517.1 MAG: hypothetical protein DRQ78_00075 [Campylobacterota bacterium] diamond 552 87.8 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
28100940 28100940 PRJNA1047749_P_NODE_35665_length_264_cov_4.136126_g35398_i0 PRJNA1047749 35665 264 4.136126 10.91937264 root 1 Root_unresolved Root_unresolved 153 2.29e-45   NR MDO7823254.1 210 g35398 i0 93.1 8.89772727272727 87 6 98.9 0 3 263 57 143 MDO7823254.1 DNA polymerase domain-containing protein [Helicobacter pylori] diamond 2349 153 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31014765 31014765 PRJNA1047749_P_NODE_49915_length_209_cov_4.044118_g49648_i0 PRJNA1047749 49915 209 4.044118 8.45220662 Helicobacter pylori 210 Bacteria Bacteria 58.5 1.74e-9   NR GAA9208956.1 210 g49648 i0 46 3.64593301435407 63 33 89 1 202 17 3 65 GAA9208956.1 hypothetical protein BTM369_15040 [Helicobacter pylori] diamond 762 58.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32564948 32564948 PRJNA1047749_P_NODE_38919_length_253_cov_0.866667_g38652_i0 PRJNA1047749 38919 253 0.866667 2.19266751 Helicobacter pylori 210 Bacteria Bacteria 43.1 0.0098   NR GAA6899358.1 210 g38652 i0 43.2 1.51778656126482 44 25 52.2 0 49 180 22 65 GAA6899358.1 hypothetical protein Kyoto207A_1080 [Helicobacter pylori] diamond 384 43.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;