RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1047749" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1047749 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27129697 27129697 PRJNA1047749_P_NODE_40502_length_248_cov_4.965714_g40235_i0 PRJNA1047749 40502 248 4.965714 12.31497072 Fusobacterium 848 Bacteria Bacteria 168 1.4e-49   NR WP_235247324.1 848 g40235 i0 100 0.967741935483871 80 0 96.8 0 241 2 217 296 WP_235247324.1 MULTISPECIES: adenosylcobinamide-phosphate synthase CbiB [Fusobacterium] diamond 240 168 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium  
28795492 28795492 PRJNA1047749_P_NODE_34267_length_270_cov_2.131980_g34000_i0 PRJNA1047749 34267 270 2.13198 5.756346 Fusobacterium 848 Bacteria Bacteria 165 5.08e-47   NR WP_235247013.1 852 g34000 i0 93.3 2 90 6 100 0 1 270 107 196 WP_235247013.1 tRNA lysidine(34) synthetase TilS [Fusobacterium perfoetens] diamond 540 165 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium perfoetens
32501624 32501624 PRJNA1047749_P_NODE_28699_length_292_cov_4.936073_g28432_i0 PRJNA1047749 28699 292 4.936073 14.41333316 Leptotrichiaceae bacterium 2782225 Bacteria Bacteria 44.7 0.013   NR MBP6102701.1 2782225 g28432 i0 37.5 0.657534246575342 64 37 62.7 1 290 108 237 300 MBP6102701.1 acetate kinase [Leptotrichiaceae bacterium] diamond 192 44.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae   Leptotrichiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;