RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1047749" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA1047749 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27343541 27343541 PRJNA1047749_P_NODE_27283_length_297_cov_3.290179_g27016_i0 PRJNA1047749 27283 297 3.290179 9.77183163 Bdellovibrionota 3018035 Bacteria Bacteria 64.7 2.12e-10   NR OGQ36731.1 1797867 g27016 i0 54.2 4.46464646464646 48 22 48.5 0 149 6 107 154 OGQ36731.1 MAG: hypothetical protein A3F16_00410 [Deltaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_43_9] diamond 1326 65.1 0.993855606758833 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_43_9
29592736 29592736 PRJNA1047749_P_NODE_18790_length_312_cov_3.577406_g18523_i0 PRJNA1047749 18790 312 3.577406 11.16150672 Deltaproteobacteria bacterium RBG_16_49_23 1797840 Bacteria Bacteria 58.5 8.31e-9   NR OGP74378.1 1797840 g18523 i0 74.3 0.673076923076923 35 9 33.7 0 1 105 25 59 OGP74378.1 MAG: hypothetical protein A2V86_15575 [Deltaproteobacteria bacterium RBG_16_49_23] diamond 210 58.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_49_23
30793504 30793504 PRJNA1047749_P_NODE_21034_length_311_cov_7.613445_g20767_i0 PRJNA1047749 21034 311 7.613445 23.67781395 Olavius sp. associated proteobacterium Delta 1 698986 Bacteria Bacteria 43.9 0.0133   NR CAB1065859.1 698986 g20767 i0 40.8 1.22508038585209 49 26 44.4 1 170 307 31 79 CAB1065859.1 hypothetical protein D1BOALGB6SA_10658 [Olavius sp. associated proteobacterium Delta 1] diamond 381 43.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius sp. associated proteobacterium Delta 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;