RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1047551" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047551 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28258795 28258795 PRJNA1047551_S_NODE_6386_length_197_cov_2.549383_g6259_i0 PRJNA1047551 6386 197 2.549383 5.02228451 Metazoa 33208 Nematoda Nematoda 101 2.32e-26   NR KRY02308.1 6334 g6259 i0 90.8 7.91878172588832 65 6 99 0 2 196 2 66 KRY02308.1 Tropomyosin, partial [Trichinella spiralis] diamond 1560 101 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
29174780 29174780 PRJNA1047551_S_NODE_10509_length_165_cov_1.353846_g10382_i0 PRJNA1047551 10509 165 1.353846 2.2338459 Metazoa 33208 Nematoda Nematoda 72 2.46e-13   NR CAD6186715.1 2777116 g10382 i0 65.3 3.56363636363636 49 17 89.1 0 1 147 211 259 CAD6186715.1 unnamed protein product [Caenorhabditis auriculariae] diamond 588 72.4 0.994475138121547 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
31172407 31172407 PRJNA1047551_S_NODE_3835_length_240_cov_4.385366_g3708_i0 PRJNA1047551 3835 240 4.385366 10.5248784 Caenorhabditis remanei 31234 Nematoda Nematoda 68.6 2.81e-11   NR EFO92035.1 31234 g3708 i0 69 2.1 42 13 52.5 0 223 98 541 582 EFO92035.1 hypothetical protein CRE_21089 [Caenorhabditis remanei] diamond 504 68.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;