RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1047551" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047551 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31417614 31417614 PRJNA1047551_S_NODE_9296_length_172_cov_2.379562_g9169_i0 PRJNA1047551 9296 172 2.379562 4.09284664 Metazoa 33208 Mollusca Mollusca 79.3 2.17e-16   NR XP_045192477.2 6596 g9169 i0 75.4 17.843023255814 57 14 99.4 0 172 2 73 129 XP_045192477.2 60S ribosomal protein L13-like [Mercenaria mercenaria] diamond 3069 79.7 0.994981179422836 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
32335330 32335330 PRJNA1047551_S_NODE_2259_length_301_cov_3.364662_g2132_i0 PRJNA1047551 2259 301 3.364662 10.12763262 root 1 Root_unresolved Root_unresolved 48.1 9.42e-4   NR KAJ8314025.1 220873 g2132 i0 39.7 3.0797342192691 63 33 57.8 3 290 117 929 991 KAJ8314025.1 hypothetical protein KUTeg_008586 [Tegillarca granosa] diamond 927 48.5 0.991752577319588 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Arcoida Arcidae Tegillarca Tegillarca granosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;