RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA1047551" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047551 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15477469 15477469 PRJNA1047551_S_NODE_7473_length_186_cov_1.834437_g7346_i0 PRJNA1047551 7473 186 1.834437 3.41205282 Corynebacterium suicordis 203264 Bacteria Bacteria 122 4.6e-31   NR MBF4554160.1 1121369 g7346 i0 96.7 0.983870967741935 61 2 98.4 0 4 186 387 447 MBF4554160.1 PepSY domain-containing protein [Corynebacterium suicordis DSM 45110] diamond 183 122 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium suicordis
19300521 19300521 PRJNA1047551_S_NODE_9376_length_172_cov_1.350365_g9249_i0 PRJNA1047551 9376 172 1.350365 2.3226278 Kocuria carniphila 262208 Bacteria Bacteria 114 3.87e-28   NR WP_129699457.1 262208 g9249 i0 94.7 0.994186046511628 57 3 99.4 0 2 172 59 115 WP_129699457.1 anthranilate synthase component I [Kocuria carniphila] diamond 171 114 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria carniphila
27825126 27825126 PRJNA1047551_S_NODE_6224_length_199_cov_2.719512_g6097_i0 PRJNA1047551 6224 199 2.719512 5.41182888 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 87.4 3.81e-18   NR HEX2102415.1 2586742 g6097 i0 56.1 2.95477386934673 66 29 99.5 0 198 1 502 567 HEX2102415.1 phosphoenolpyruvate carboxykinase (GTP) [Solirubrobacteraceae bacterium] diamond 588 87.4 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
29017076 29017076 PRJNA1047551_S_NODE_9588_length_170_cov_3.162963_g9461_i0 PRJNA1047551 9588 170 3.162963 5.3770371 Actinomadura 1988 Bacteria Bacteria 41.2 0.0354   NR WP_176403677.1 2745202 g9461 i0 40.9 1.53529411764706 44 26 77.6 0 4 135 29 72 WP_176403677.1 GNAT family N-acetyltransferase [Actinomadura sp. BRA 177] diamond 261 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp. BRA 177
29490202 29490202 PRJNA1047551_S_NODE_12190_length_156_cov_1.793388_g12063_i0 PRJNA1047551 12190 156 1.793388 2.79768528 Actinomycetes 1760 Bacteria Bacteria 76.3 1.77e-14   NR MEO6714109.1 1957017 g12063 i0 70.6 3.90384615384615 51 15 98.1 0 156 4 107 157 MEO6714109.1 PAS domain-containing protein [Mycobacteriales bacterium] diamond 609 77 0.990909090909091 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales     Mycobacteriales bacterium
30603894 30603894 PRJNA1047551_S_NODE_7453_length_186_cov_2.264901_g7326_i0 PRJNA1047551 7453 186 2.264901 4.21271586 Amycolatopsis suaedae 2510978 Bacteria Bacteria 42.4 0.0233   NR WP_130474293.1 2510978 g7326 i0 39.7 0.935483870967742 58 35 93.5 0 9 182 117 174 WP_130474293.1 aldose 1-epimerase family protein [Amycolatopsis suaedae] diamond 174 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis suaedae
30635408 30635408 PRJNA1047551_S_NODE_11873_length_158_cov_1.186992_g11746_i0 PRJNA1047551 11873 158 1.186992 1.87544736 Corynebacterium bouchesdurhonense 1720192 Bacteria Bacteria 54.7 6.94e-8   NR WP_078056841.1 1720192 g11746 i0 96.7 0.569620253164557 30 1 57 0 109 20 1 30 WP_078056841.1 DUF2516 family protein [Corynebacterium bouchesdurhonense] diamond 90 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium bouchesdurhonense
31046614 31046614 PRJNA1047551_S_NODE_3755_length_243_cov_1.543269_g3628_i0 PRJNA1047551 3755 243 1.543269 3.75014367 Varibaculum cambriense 184870 Bacteria Bacteria 43.1 0.0277   NR WP_060920419.1 184870 g3628 i0 39.5 0.530864197530864 43 25 51.9 1 209 84 1457 1499 WP_060920419.1 InlB B-repeat-containing protein [Varibaculum cambriense] diamond 129 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Varibaculum Varibaculum cambriense
31330745 31330745 PRJNA1047551_S_NODE_2736_length_277_cov_2.227273_g2609_i0 PRJNA1047551 2736 277 2.227273 6.16954621 unclassified Modestobacter 2643866 Bacteria Bacteria 44.3 0.0156   NR WP_269172644.1 2643866 g2609 i0 36.8 1.02888086642599 95 40 83.4 4 34 264 263 355 WP_269172644.1 MULTISPECIES: DUF1015 domain-containing protein [unclassified Modestobacter] diamond 285 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Modestobacter  
32533220 32533220 PRJNA1047551_S_NODE_9919_length_168_cov_2.240602_g9792_i0 PRJNA1047551 9919 168 2.240602 3.76421136 Acidimicrobiaceae bacterium 2024894 Bacteria Bacteria 43.9 0.00516   NR MEY2588768.1 2024894 g9792 i0 46.3 0.732142857142857 41 21 71.4 1 14 133 70 110 MEY2588768.1 hypothetical protein [Acidimicrobiaceae bacterium] diamond 123 43.9 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Acidimicrobiaceae   Acidimicrobiaceae bacterium
32722122 32722122 PRJNA1047551_S_NODE_7400_length_187_cov_1.434211_g7273_i0 PRJNA1047551 7400 187 1.434211 2.68197457 Kitasatospora sp. NPDC 1871188 Bacteria Bacteria 40.8 0.0171   NR WP_380269986.1 3346001 g7273 i0 48.6 0.593582887700535 37 19 59.4 0 60 170 42 78 WP_380269986.1 NUDIX domain-containing protein [Kitasatospora sp. NPDC057015] diamond 111 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. NPDC057015
32847979 32847979 PRJNA1047551_S_NODE_13060_length_152_cov_4.623932_g12933_i0 PRJNA1047551 13060 152 4.623932 7.02837664 Ilumatobacteraceae bacterium 2497619 Bacteria Bacteria 46.2 3.34e-4   NR HEY4608371.1 2497619 g12933 i0 88 0.493421052631579 25 3 49.3 0 151 77 137 161 HEY4608371.1 OsmC family peroxiredoxin [Ilumatobacteraceae bacterium] diamond 75 46.2 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae   Ilumatobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;